Pairwise Alignments

Query, 219 a.a., Rhomboid family protein from Sphingobium sp. HT1-2

Subject, 300 a.a., rhomboid family protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 55.1 bits (131), Expect = 1e-12
 Identities = 63/198 (31%), Positives = 87/198 (43%), Gaps = 36/198 (18%)

Query: 14  LVTFVLFLL-LLATGQIDNAALLGGFMPARIGNPGLLDGMAAVPWWLTPLSCTFVHAGWL 72
           L++ +L L  L ATG  D  AL           P  L      PW L  LS  F+HAG+L
Sbjct: 34  LISVILQLFNLSATGIFDLFAL-----------PASLHRFILQPWSL--LSYMFMHAGFL 80

Query: 73  HIAFNLLMLLFCGRQVEHVLGRTGTLILYVVGAYAACFGQWAITPESINP---------- 122
           HI FN+L L + G    +         LYV+G    C G + +   +I P          
Sbjct: 81  HILFNMLWLYWFGSLFLYFFSGKHLRGLYVLG--GICGGLFYMIAYNIFPYFSQTLPFST 138

Query: 123 MVGASGAISAIIATYALLYSQQQVRRIGPLSANFVRVLWLAAAWIAIQLMIGVATAGGLG 182
           +VGAS ++ AI+A  A    ++   R+       VR+ +LA   I   L+   +   G  
Sbjct: 139 LVGASASVLAIVAATAY---REPNYRVQLFLFGAVRLKYLALIVIGTDLLFITSNNAG-- 193

Query: 183 DLGQIAIAAHIGGFLAGL 200
             G I   AH+GG LAGL
Sbjct: 194 --GHI---AHLGGALAGL 206