Pairwise Alignments

Query, 497 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

 Score =  156 bits (395), Expect = 1e-42
 Identities = 133/462 (28%), Positives = 197/462 (42%), Gaps = 28/462 (6%)

Query: 50  LWSDKGKVRAEPAQALLMLLDSADQDGLRSRDYDARGLLRAIKEADASGDPKALARVDVA 109
           LWSD     A   +A L ++  A    L SR   A   L++ ++ D   +       DV 
Sbjct: 59  LWSDLAT--ANHFEAQLEVIHRASFSPLFSRQLFA---LKSYRQQDRWHE------YDVL 107

Query: 110 LSKALAAYVADVRRPSKAVKMRY----LDPEVEPQAPDAAEVLRAAAVAPSLASYVEKAG 165
            +  L  Y++   +  K     +    LD  + P + +A   L  A    SLA  +++  
Sbjct: 108 ATDTLLQYLSYAEQAPKVGIAWFFEGQLDQPLAPPSEEAQLALHMAIGNQSLARLMDEYT 167

Query: 166 WMSPLYMKLRAASGAYETRWGGLPAVNVPTDVKLRPGGSSGEIAILRHRLGLP------- 218
              P Y +L  A  +  +      A+    +   RPG        L  RL L        
Sbjct: 168 PQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLKRPGDPLSHREALVQRLALVNLDTTSI 227

Query: 219 --DGVDYDKALAAKVKLFQADHGLDADGIAGAQTIEALNRGPGYFARILQLNLERARLLP 276
             D   YD +L   +K FQ  HGL  DG+ G QT++ LN        +L LN ER RL P
Sbjct: 228 LNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWP 287

Query: 277 GPWVRHVEVDAASARLYYYSGGELDGSMKVVAGAKESQTPMMAGMIRYATLNPYWNVPPD 336
                 + V+     + Y+  G      KVV G     TP+M   +    +NP WNVP  
Sbjct: 288 TQQDSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHK 347

Query: 337 LVERKIAPKIL-DGATLRKMRYEALSDWTADAQTLNQSEIDWQAVAAGQRELRVRQLPGG 395
           ++   I P +  D   L     E +  W+ D + ++ + IDW+AV       R+RQ  G 
Sbjct: 348 IMVEDILPMVKRDSEYLANHHMEIIRGWS-DPEVIDPALIDWEAVEPETFPYRLRQQAGV 406

Query: 396 NNAMGKIKFMFPNDLGIYLHDTPDRALFAKPVRHFSNGCVRLEDAQRLGRWFFGKTPTAE 455
            NA+G  KF  PN   IYLHDTP + LF    R FS+GC+R+E+A++  +          
Sbjct: 407 QNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITL 466

Query: 456 SDAP--EQYVPLPRPVPVYLTYLTVVPTADGVQFLPDDYGRD 495
            D P   Q + L + +PV++ Y TV      + +  D Y  D
Sbjct: 467 DDFPVSTQAIALKKRIPVHIIYQTVWYEEGVLHYRDDIYHYD 508