Pairwise Alignments

Query, 404 a.a., Integrase from Sphingobium sp. HT1-2

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  223 bits (568), Expect = 8e-63
 Identities = 131/391 (33%), Positives = 213/391 (54%), Gaps = 9/391 (2%)

Query: 2   LTTIQINALKPREKPYKVADAKGLYILVNPNGSLLWRVKFRFHGIEKK---MALGRYPDV 58
           LT  Q+   K  +K Y ++D  GL + V  NG+ LW +K+  H I KK   ++ G +PDV
Sbjct: 8   LTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYT-HPITKKRNNISFGCFPDV 66

Query: 59  GLKEARQKRDEAREQLEGGVDPLAARIQAKIEAEAAARTTFRVVTDEFIEKMEREGKAPA 118
            L EAR++R EA+  L   +DP   + +  ++  A    TF   +D ++  ++RE   P 
Sbjct: 67  SLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLT-LKRESVKPE 125

Query: 119 TLKKM-RWFRDELQPTIGHRPIAEISAHELLNALKRFERKGHFESAIRARSFSGRVFRYA 177
           T  K  R     + P +G+ PI +I    +L+ L+  + +G  E+  R       V R A
Sbjct: 126 TADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLA 185

Query: 178 VATLRAQHNPADILRGALITPKVKHHAALLEPAKVGELLRAIDGYGGKIETRIALQLAPH 237
           VA+   + N    +      PK + H   +EP ++ EL++AI      + TR  L+   H
Sbjct: 186 VASGDIEVNYLADITKLFPAPK-RQHMVTIEPERLPELMQAIANANITLATRCLLEWQLH 244

Query: 238 VYLRPGELRKAEWGEIDFDAAVWRVPAGRTKMRKPHAVPLSTQVVTLLRELRAMGNLGSY 297
              RP E   A W +IDF   VW +PA R KM++PH +PL+ Q + LL  ++ + +   Y
Sbjct: 245 TMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREY 304

Query: 298 LFPANSTFLKPICENTLNVALRRLGFTRDEMTSHGFRSIASTLLNESGLWHPDAIERSLA 357
           +FP+N      +   + N+AL+R+G+ + ++ SHG R++AST LNE G ++PD IE +LA
Sbjct: 305 IFPSNKNPKSHVNSQSANMALKRMGY-KGQLVSHGLRALASTTLNEQG-FNPDIIEAALA 362

Query: 358 HRERDSVRAAYHRGAHWEERVRMAQWWSDYL 388
           H +++ VR AY+R  + E+R ++  WWS ++
Sbjct: 363 HVDKNEVRKAYNRAEYLEQRRKLMSWWSSHI 393