Pairwise Alignments

Query, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

Subject, 179 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

 Score = 48.1 bits (113), Expect = 9e-11
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 15/160 (9%)

Query: 22  IFFQNRAALLRFLRAR-GAGEDAEDLLQDMWMKLEAKDLGPVAD----------PLPYLY 70
           +F ++R AL+ +     G    AED++Q+ W++ ++    P +           P+ YLY
Sbjct: 10  LFLRHRRALIDYATPIVGDSMRAEDVVQEAWLRFDSASPSPTSTEAGRGTALERPVGYLY 69

Query: 71  RMANNLMLDRYRSATRRERREQDWAEGAGGVMADPNDDLAVDERMILNQRLEQARGILAD 130
           ++  NL +D     +RR +RE    +G   +        + ++  I    L      LA 
Sbjct: 70  KIVRNLAVD----LSRRLKREAWMGDGGASLDGVAAGAPSPEQEAIGRDDLRAVAQALAS 125

Query: 131 LGPRVELVFRRFRIEGVGQRLIAEELGVSLTTVEKDLQKA 170
           L PR    F   R E      I + LG+S T     + +A
Sbjct: 126 LPPRTRTAFDLHRFENCTFAEIGQRLGISQTRAHSLVHEA 165