Pairwise Alignments

Query, 286 a.a., Ku domain protein from Sphingobium sp. HT1-2

Subject, 301 a.a., Ku from Pseudomonas syringae pv. syringae B728a

 Score =  138 bits (348), Expect = 1e-37
 Identities = 95/294 (32%), Positives = 157/294 (53%), Gaps = 18/294 (6%)

Query: 3   ARAFWQGQIKLALVSIPVEIYPATKSGAAVSFRQIHEPTGKPIHYDKV--VTGVGPVDPE 60
           ARA W+G I   LV IPV +  AT S  +V F  + + +  P+ Y ++  VTG   V  E
Sbjct: 2   ARAIWKGAISFGLVHIPVALVSATTS-TSVDFDWLDKRSMDPVGYKRINKVTGK-EVTSE 59

Query: 61  EILKGFEISKGNYVLLEQDEIEAVKIESRKTLDLVQFVEADAIDVLYYEKPYFVVPADDL 120
            I+KG    K  YV+L ++EI +   +S +T+D+  FV++  I +   + PYF+ P D  
Sbjct: 60  NIVKGVAYEKDRYVVLSEEEIRSAHPKSTQTIDIFAFVDSQQIPLQNIDTPYFLTP-DKR 118

Query: 121 AEEAYAVLRDALRQTRKVGLGQLSVRGREQLVSLKPCGRGMVLEVLRYADEVTKAQT--Y 178
            E+ YA+LR+ L  T+KV L  + +  RE L ++ P    +V+ +LR+  +V +  T   
Sbjct: 119 GEKVYALLRETLVDTKKVALANVVLHTREHLAAVMPLESALVMVILRWPADVRELDTLEL 178

Query: 179 FRGLPDDTADEDMLDLAVSIIDKRTAPFNPEEFHDRYVDALHRLIDKKKKAKGKRIIEEV 238
              + D   ++   D+A  ++   +A + PE++ D + D +  L+ K K  +G+  IE+V
Sbjct: 179 SDAVTDAKLNKSERDMAKRLVKDMSADWQPEQYRDTFQDKIMHLV-KTKADEGE--IEDV 235

Query: 239 DDEPT--DRKAGNVIDLMAALKKS------AGEAGRKAPAKGKVPAKNAATRRK 284
           + +P   +RK+ +VIDL   L++S      AG+A    PA  + PA     R K
Sbjct: 236 ETDPAEEERKSADVIDLTDLLRRSLAGKGGAGKAKTSKPAAKEKPADKDGARPK 289