Pairwise Alignments

Query, 286 a.a., Ku domain protein from Sphingobium sp. HT1-2

Subject, 294 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  159 bits (401), Expect = 9e-44
 Identities = 97/297 (32%), Positives = 164/297 (55%), Gaps = 21/297 (7%)

Query: 3   ARAFWQGQIKLALVSIPVEIYPATKSGAAVSFRQIHEPTGKPIHYDKVVTGVG-PVDPEE 61
           ARA W+G ++   V+ PV +Y AT +   ++F  ++  TG  +  + + +  G PV+ E+
Sbjct: 5   ARAQWKGYLRFGEVTAPVALYTATSTSDRIAFHTVNRETGNRVRREFIDSVSGKPVEKED 64

Query: 62  ILKGFEISKGNYVLLEQDEIEAVKIESRKTLDLVQFVEADAIDVLYYEKPYFVVPADDLA 121
            +KG+EI    YV+LE +E+ +   ES KTL +  F+  D ++ +Y++KPY++ P D + 
Sbjct: 65  QVKGYEIGDERYVVLEPEEVASAVPESDKTLRVQAFIPCDEVEKVYFDKPYYLTP-DKMG 123

Query: 122 EEAYAVLRDALRQTRKVGLGQLSVRGREQLVSLKPCGRGMVLEVLRYADEVTKAQTYFRG 181
            +A+A+LR+ +R+ +   + Q  +  R + + L+P  +G++   L +  EV  A+  F+ 
Sbjct: 124 TDAFALLREGMRKKKVAAIAQTVLFRRMRTILLRPHDKGLIATTLNFDYEVRSAKEAFKE 183

Query: 182 LPDDTADEDMLDLAVSIIDKRTAPFNPEEFHDRYVDALHRLIDKKKKAKGKRIIEEVDDE 241
           +PD   + +MLDLA  II  +   F+ EEF DRY  AL  LI  K K +GK + +     
Sbjct: 184 IPDIKIEGEMLDLAKHIIGMKKGTFSAEEFDDRYEAALADLI--KAKLEGKSLPKRAPP- 240

Query: 242 PTDRKAGNVIDLMAALKKSAG----------EAGRKAPA--KGKVPAKNAATRRKSA 286
               K     DL+ AL++SAG           AG+++ A  K K  AK+A  +R+ A
Sbjct: 241 ----KVSKANDLLEALRQSAGMKKPPAASKKRAGKESAAKTKAKTAAKSAPAQRRRA 293