Pairwise Alignments

Query, 240 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Sphingobium sp. HT1-2

Subject, 556 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  214 bits (546), Expect = 2e-60
 Identities = 118/247 (47%), Positives = 152/247 (61%), Gaps = 11/247 (4%)

Query: 4   ADPLAPYNAKRDFSRTREPRGK--VGKTGGRSFVVQKHAATRLHWDFRLEIDGVLKSWAV 61
           AD L+   AKRDF +TREP G+  V  +  R FV+QKH ATRLH+D RLE+DGV KSWAV
Sbjct: 2   ADNLSKDRAKRDFKKTREPSGEAQVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWAV 61

Query: 62  TKGPSLDPADKRLAVRTEDHPLDYGAFEGNIPKGEYGGGSVMLWDRGTWEPIPGKRADD- 120
           TKGPSLDP+DKRLAV  EDHPLDYG FEG +PKG+YGGG+VMLWDRG WEP   K  ++ 
Sbjct: 62  TKGPSLDPSDKRLAVEVEDHPLDYGDFEGTVPKGQYGGGTVMLWDRGYWEPEGRKSPEEA 121

Query: 121 LKDGHLHFILHGERMKGEWLLVRMKG-RPSEKRENWLLRKVEDDHASDSED--LVGHALT 177
           LK G   F LHG+R+ G ++LVRM+  R   KR NWLL K  DD++ D     ++    T
Sbjct: 122 LKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDYSVDENGAAILEENAT 181

Query: 178 SILTARSMAQI-----QADRDGTQSLKGAKGKAFADKMQAARSHNDRVRTRAKSGKEESA 232
           S+ + RSM QI     +  R    +    +  A  D      +   +  +R       +A
Sbjct: 182 SVASGRSMEQIAEGTGRKPRPFMMANADVEADAVWDSKHGLAAEERKKGSRRDVATSTAA 241

Query: 233 SIPRFVK 239
            +P F++
Sbjct: 242 DLPDFIE 248