Pairwise Alignments

Query, 312 a.a., putative membrane protein from Sphingobium sp. HT1-2

Subject, 360 a.a., cytoskeleton protein RodZ from Vibrio cholerae E7946 ATCC 55056

 Score = 43.9 bits (102), Expect = 6e-09
 Identities = 59/275 (21%), Positives = 107/275 (38%), Gaps = 16/275 (5%)

Query: 16  AAQPSTPGAKLRAAREAQGLSVQDIATRTRIAQRQLEAIERDDYGALPGIPYAVGFARAY 75
           A +   PG  L+  RE  GL+ + IA R R+    +++IE + +       +  G+ R+Y
Sbjct: 21  AIEKVAPGTLLKQKREDLGLTQRQIADRLRLRLSIIQSIEENRFEDGQVATFTRGYLRSY 80

Query: 76  ARAIDLDEVAIAADVRNAVHNSDMGATRYEAFEPADPARVPSRTLAWTAAVIGIIVIAGF 135
           A+A+ + E  I     ++           ++F      ++    +     VI  +++   
Sbjct: 81  AKAVGIRESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIMLITWVILAVIVGMS 140

Query: 136 TIWRTQLLTPPTGEEIAEQQAEKPAAAPKAGVQAPIAAPVTGPVVFTA---NDDVWMRIV 192
           T+W  Q         I ++    P+A   + +Q+   A +      T    N+       
Sbjct: 141 TLWWWQ--NSQKNSLIPDKTTIAPSAI--SDIQSSNDASLANEDFATVPPLNELQDAAPA 196

Query: 193 DEAGERLKDGLLKKGESFTLPAGARNPTILTGRPQALDVTVGGKAIPPLGAADRTIADVP 252
            E     ++ L  +    T PA      ++T +P      V   A  P+  A +     P
Sbjct: 197 SEEAPMSQESLSGEASELTPPA-PNEADVVTDKP-----VVEETAAAPVAPA-QPQGQTP 249

Query: 253 VSAEALLARAAAPAGAPAGAPAPAGQPSRAPTTPA 287
           V ++A +  AAAP   P  AP+   QP  + T  A
Sbjct: 250 VQSQAPV--AAAPVTQPEAAPSAPSQPVSSSTESA 282



 Score = 43.5 bits (101), Expect = 8e-09
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 37/143 (25%)

Query: 143 LTPP--------TGEEIAEQQAEKPAAAPKAGVQAPI-------AAPVTGP--------- 178
           LTPP        T + + E+ A  P A  +   Q P+       AAPVT P         
Sbjct: 214 LTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPVAAAPVTQPEAAPSAPSQ 273

Query: 179 ------------VVFTANDDVWMRIVDEAGERLKDGLLKKGESFTLPAGARNPTILTGRP 226
                       +V   + D W+++ D  G+ L  G+ K G+S +L +G R   ++ G P
Sbjct: 274 PVSSSTESASALLVMNFSADCWIQVKDATGKTLSTGVKKAGQSVSL-SGQRPYKLVLGAP 332

Query: 227 QALDVTVGGKAIPPLGAADRTIA 249
           + + +T+  + +   G     +A
Sbjct: 333 EGVSITLASEPVDLSGYTSGKVA 355



 Score = 27.7 bits (60), Expect = 4e-04
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 238 IPPLGA---ADRTIADVPVSAEALLARAA-----APAGAPAGAPAPA-GQPSRAPTTPAG 288
           +PPL     A     + P+S E+L   A+     AP  A      P   + + AP  PA 
Sbjct: 184 VPPLNELQDAAPASEEAPMSQESLSGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQ 243

Query: 289 GQGSVPT-SAAPPPPTAAPQPSA 310
            QG  P  S AP       QP A
Sbjct: 244 PQGQTPVQSQAPVAAAPVTQPEA 266