Pairwise Alignments

Query, 478 a.a., sigma-54 dependent DNA-binding response regulator from Sphingobium sp. HT1-2

Subject, 466 a.a., nitrogen regulation protein NR(I) from Vibrio cholerae E7946 ATCC 55056

 Score =  287 bits (735), Expect = 5e-82
 Identities = 169/468 (36%), Positives = 257/468 (54%), Gaps = 16/468 (3%)

Query: 11  LIDDEPAQRRLVSALAARAGWRTIFASDAETALATLGTQDGIQLDAVLIDQWSPDFDPAD 70
           ++DD+ + R ++    + A  +    +DAE+ L  L  +     D ++ D   P  D   
Sbjct: 8   VVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALERETP---DVLVSDIRMPGMDGIA 64

Query: 71  LIGDIHAQRPALPILVLTAHNSVAVAVQAMRAGATDYLSKPIAPERLLAALNATLEGNVR 130
           L+  +H + P LP++++TAH+ +  AV A + GA +YL KP   +  L  +   +     
Sbjct: 65  LLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAHGQ- 123

Query: 131 GELRPLTEKISAPLAFEDVVGAAPQFRTALAIAAKAARARVPVLIEGESGVGKDVVARAI 190
            E R  + + S   +  +++G AP  +       + +R+ + VLI GESG GK++VA A+
Sbjct: 124 -EQRKTSHRPSENYSAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGESGTGKELVAHAL 182

Query: 191 HAASPRHKQAMVTVNCGAIPANLVESELFGHERGAFTGAFDRHVGKFLSADMGTIFLDEV 250
           H  SPR ++  + +N  AIP +L+ESELFGHE+GAFTGA     G+F  A+ GT+FLDE+
Sbjct: 183 HRHSPRAQKPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRFEQANGGTLFLDEI 242

Query: 251 SEMPLDAQVKLLRVLQDGEVQPIGARRPVHVDVRVIAATNKKLSDEIEAGRFREDLYYRL 310
            +MPLD Q +LLRVL DG+   +G    + VDVR++AAT++ L   +  G+FREDL++RL
Sbjct: 243 GDMPLDIQTRLLRVLADGQFYRVGGHVAIKVDVRIVAATHQNLEKLVHQGKFREDLFHRL 302

Query: 311 NVVQLTVPPLRERMGDIPALCRHLLARIATQPGLRGLGLTDDALALLMQHDWPGNVRQLQ 370
           NV+++ +P LRER  DI  L +H LA  A + G+    L    + +L + DWPGNVRQL+
Sbjct: 303 NVIRIHIPSLRERRQDIEKLTKHFLALAAKELGVEMKTLNPRTVDILTKLDWPGNVRQLE 362

Query: 371 NALFRAAVLCEGDALTPHDFP------QVAAHILSRGASGPRQRAAATPPREAAGITLFE 424
           N      V+  G  + P D P      + A+H      S  +Q         A+G    E
Sbjct: 363 NMCRWLTVMASGSEVLPSDLPSELLSERKASH-FDNDISWQKQLETWAKSALASG----E 417

Query: 425 GDGHVRQLAEIEADVIRLAIGHYRGRMTEVARRLGIGRSTLYRKLAEL 472
            +     L E E  ++  A+ H  G   E A+ LG GR+TL RKL EL
Sbjct: 418 TELLAYALPEFERILLEAALHHTNGHKQEAAKVLGWGRNTLTRKLKEL 465