Pairwise Alignments

Query, 478 a.a., sigma-54 dependent DNA-binding response regulator from Sphingobium sp. HT1-2

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  277 bits (708), Expect = 6e-79
 Identities = 183/487 (37%), Positives = 263/487 (54%), Gaps = 37/487 (7%)

Query: 8   LLMLIDDEPAQRRLVSALAARAGWRTIFASDAETALATLGTQDGIQLDAVLIDQWSPDFD 67
           +L++ DDE  +  L+  LA  AG+  + A  AE AL  L +     +D V+ D       
Sbjct: 8   VLIVEDDEGLREALIDTLAL-AGYEWLEADCAEDALLKLKSHS---VDIVVSDVQMAGMG 63

Query: 68  PADLIGDIHAQRPALPILVLTAHNSVAVAVQAMRAGATDYLSKPIAPERLLAALNATLEG 127
              L+  I    P LP+L++TA+ ++  AV AM+ GA DY++KP APE LL         
Sbjct: 64  GLALLRSIKQHWPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLL--------- 114

Query: 128 NVRGELRPLTEKISAPLAFEDVVGAAPQFRTALAIAAKAARARVPVLIEGESGVGKDVVA 187
           N+     P+    +      D V A  +    LA+A K A+    V+I G SG GK+V++
Sbjct: 115 NMVSRYAPVKSDDNG-----DAVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMS 169

Query: 188 RAIHAASPRHKQAMVTVNCGAIPANLVESELFGHERGAFTGAFDRHVGKFLSADMGTIFL 247
           R IH ASPR +   + +NC AIP N++E+ LFG+E+GAFTGA     GKF  A  GTI L
Sbjct: 170 RYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILL 229

Query: 248 DEVSEMPLDAQVKLLRVLQDGEVQPIGARRPVHVDVRVIAATNKKLSDEIEAGRFREDLY 307
           DE+SEM L+ Q KLLRVLQ+ EV+ +G+R+ + +DVRV+A +N+ L   ++AG FREDLY
Sbjct: 230 DEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLY 289

Query: 308 YRLNVVQLTVPPLRERMGDIPALCRHLLARIATQPGLRGLGLTDDALALLMQHDWPGNVR 367
           YRLNV  LT P L ER  DI  L  HL+ R   + GL    +  +A+  L+ + WPGNVR
Sbjct: 290 YRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVR 349

Query: 368 QLQNALFRAAVLCEG----------DALTPHDFPQVAAHILSRGASGPRQRAAATP---- 413
           +L N + RA +L E           + +  HD   +   +     + P+ +  A P    
Sbjct: 350 ELDNVVQRALILSENGHIQSEHILLEGVDWHDASSLQQAVAGESMAAPQIKPVAEPEVFK 409

Query: 414 PREAAG--ITLFEGDGHVRQLAEIEADVIRLAIGHYRGRMTEVARRLGIGRSTLYRKLAE 471
           P    G   +  +  G   +L + E  +I   +   +GR  E+A +LGI   TL  KLA+
Sbjct: 410 PLVQGGGQNSSSQSSGLGGELRDQEFAIILDTLAECQGRRKEMAEKLGISPRTLRYKLAK 469

Query: 472 L---GID 475
           +   GID
Sbjct: 470 MRDAGID 476