Pairwise Alignments

Query, 478 a.a., sigma-54 dependent DNA-binding response regulator from Sphingobium sp. HT1-2

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  283 bits (724), Expect = 8e-81
 Identities = 174/470 (37%), Positives = 256/470 (54%), Gaps = 36/470 (7%)

Query: 9   LMLIDDEPAQRRLVSALAARAGWRTIFASDAETALATLGTQDGIQLDAVLIDQWSPDFDP 68
           + LIDDE   R  ++     A     F +  E AL  +  Q G+ L  ++ D   P    
Sbjct: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQ-GLPL-VIVSDICLPGLSG 61

Query: 69  ADLIGDIHAQRPALPILVLTAHNSVAVAVQAMRAGATDYLSKPIAPERLLAALNATLEGN 128
            +L+  +  Q   LP++++T H  +++AV+AM  GA D++ KP APERL+  ++  +E  
Sbjct: 62  QNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKR 121

Query: 129 -VRGELRPLTE--KISAPLAFEDVVGAAPQFRTALAIAAKAARARVPVLIEGESGVGKDV 185
            +  E R L    K+S  L    ++G     +T     A+ A  +  +L+ GE+G GK++
Sbjct: 122 RLTLENRQLKRSLKVSQTLG-PRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKEL 180

Query: 186 VARAIHAASPRHKQAMVTVNCGAIPANLVESELFGHERGAFTGAFDRHVGKFLSADMGTI 245
           VAR++H  S R +Q  V +NCGA+P NL+ESEL+GHE+GAFTGA  R VGKF  A  GT+
Sbjct: 181 VARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTL 240

Query: 246 FLDEVSEMPLDAQVKLLRVLQDGEVQPIGARRPVHVDVRVIAATNKKLSDEIEAGRFRED 305
           FLDE+  MP+ AQ++LLRVLQ+  ++ IG+   + +D+RVIAAT   L      G+FR+D
Sbjct: 241 FLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQD 300

Query: 306 LYYRLNVVQLTVPPLRERMGDIPALCRHLLARIATQPGLRGLGLTDDALALLMQHDWPGN 365
           LYYRLN+V LT+PPLRER  DIPAL  H L   A + G     LT   +  L+ HDWPGN
Sbjct: 301 LYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGN 360

Query: 366 VRQLQNALFRAAVLCEGDALTPHDFPQVAAHILSRGASGPRQRAAATPPREAAGITLFEG 425
           VR+L+NA  R  +L +                L++ A       +  P  +  G+     
Sbjct: 361 VRELRNAAERYVLLGK----------------LAQFAE------SHEPKSKLLGLN---- 394

Query: 426 DGHVRQLAEIEADVIRLAIGHYRGRMTEVARRLGIGRSTLYRKLAELGID 475
                Q+AE E  ++   +    G +     RL + R TLY K+ +  +D
Sbjct: 395 ----EQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQKYQLD 440