Pairwise Alignments

Query, 478 a.a., sigma-54 dependent DNA-binding response regulator from Sphingobium sp. HT1-2

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  304 bits (778), Expect = 5e-87
 Identities = 186/476 (39%), Positives = 261/476 (54%), Gaps = 26/476 (5%)

Query: 9   LMLIDDEPAQRRLVSALAARAGWRTIFASDAETALATLGTQDGIQLDAVLIDQWSPDFDP 68
           L++IDDEP  R +V A+    GW  + A   E  L  L  +   Q+  VL+D   P  D 
Sbjct: 4   LLVIDDEPGHRLMVRAVMEDVGWHVVEAGSGEEGLELLVHE---QVHVVLLDMRMPGMDG 60

Query: 69  ADLIGDIHAQRPALPILVLTAHNSVAVAVQAMRAGATDYLSKPIAPERLLAALNATLEG- 127
            + +  I   +P LP+++LTA+ +V  AV+AM+ GA DYL+KP   E L+A L    E  
Sbjct: 61  QETLARILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEHR 120

Query: 128 -----NVRGELRPLTEKISAPLAFEDVVGAAPQFRTALAIAAKAARARVPVLIEGESGVG 182
                N     R +    +APL     VGA+           +A  +   VLI GESG G
Sbjct: 121 RLVVENEELRKRYVENDPTAPL-----VGASQVMHRMRDFIRQAGPSEATVLIMGESGTG 175

Query: 183 KDVVARAIHAASPRHKQAMVTVNCGAIPANLVESELFGHERGAFTGAFDRHVGKFLSADM 242
           K+++A+A+H AS R +Q +V VNC A+P +L+ESELFG+ RGAFTGA     G+F  A  
Sbjct: 176 KELIAQALHDASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAVKDKPGRFQLARG 235

Query: 243 GTIFLDEVSEMPLDAQVKLLRVLQDGEVQPIGARRPVHVDVRVIAATNKKLSDEIEAGRF 302
           GT+FLDE+ E+PL+ Q KLLRVLQ+  V+P+G  RPV VDVR+IAATN+ L  E+  G F
Sbjct: 236 GTLFLDEIGELPLELQAKLLRVLQERVVEPLGGVRPVSVDVRIIAATNRDLRREVAKGTF 295

Query: 303 REDLYYRLNVVQLTVPPLRERMGDIPALCRHLLARIATQPGLRGLGLTDDALALLMQHDW 362
           REDLY+RLNV+++  PPLR+RM D+P L   LL ++  +       ++ D    L +H W
Sbjct: 296 REDLYFRLNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISADFFEALSRHSW 355

Query: 363 PGNVRQLQNALFRAAVLCEGDALTPHDFPQVAAHILSRGASGPRQRAAATPPREAAGITL 422
           PGNVR+L+N L RA +L   D+L+    P        + A   ++R             +
Sbjct: 356 PGNVRELENVLERALILSRTDSLSADALPPQLFGDEPQVADMQQER------------PV 403

Query: 423 FEGDGHVRQLAEIEADVIRLAIGHYRGRMTEVARRLGIGRSTLYRKLAELGIDNAA 478
            + D     L E E   +  A+  + G   + A  LGI R TL  KL + G+   A
Sbjct: 404 VDDDSRPCSLDEAEKGELLRALDVHGGHREKTADALGISRRTLQYKLKKFGLTRRA 459