Pairwise Alignments

Query, 517 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Sphingobium sp. HT1-2

Subject, 696 a.a., Type IV pilus biogenesis protein PilQ from Pseudomonas fluorescens FW300-N2E2

 Score = 92.4 bits (228), Expect = 5e-23
 Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 26/259 (10%)

Query: 184 QVMLQVKIAEVSRDVGHKIGTNFASADRSGGNLGFIGGGGRAFSTYTKPEIDTATGLITK 243
           QVM++ +I E + D    +G  +  + ++ GN    G                 TG  T 
Sbjct: 445 QVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWSSSG---------------VTTGDSTT 489

Query: 244 PAEWAFSTPSDGSYSLGGVARLFGMDIAGALD---------LAESSGLATTLAQPNLTAL 294
                 ++ +     LG      G+ IA   D           E +G    ++QP +   
Sbjct: 490 IGTPGSTSTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTS 549

Query: 295 SGETASFLAGGEYPYTVNNGPSSGNSIQFKQYGVQLAFTPTVLADGRISLRVRPTVSSLD 354
             ETA  L G E PY   +  S   S+ FK+  + L  TP +  D RI + V+ T    D
Sbjct: 550 DKETAKILKGTEIPYQEASS-SGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPD 608

Query: 355 F-SVSSTVPALKSRTAETTVELGSGQGFMIAGLLNNETGNTVNKVPGLGNIPVLGSLFKS 413
           + +  + VP +K       V +  G+  +I G+ +N     V+KVP LG++P LG LF+ 
Sbjct: 609 YLNKVNDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRR 668

Query: 414 RSFQRNETELVIVVTPYLV 432
                +++EL++ +TP ++
Sbjct: 669 DVVSDSKSELLVFLTPRIM 687