Pairwise Alignments

Query, 517 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Sphingobium sp. HT1-2

Subject, 466 a.a., PilQ2 pilus assembly protein from Sinorhizobium meliloti 1021

 Score =  224 bits (572), Expect = 4e-63
 Identities = 146/445 (32%), Positives = 241/445 (54%), Gaps = 42/445 (9%)

Query: 48  AILMSVGGSKVVNLPAKMSDVVIANPEVVDVHVRTNNQLYLIAKKPGETTVFVTAGNGKV 107
           +I ++ G +  +    +  ++VI +PE+  V   T+   Y++  + G T+V +       
Sbjct: 44  SIKVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNP 103

Query: 108 LFSGTVRVGNNLTTIDDMLRLAMPGANIAVNKMNGMVLLTGTIKAPEDAAEAERLTQAFV 167
           +    + V  +   +   +R ++PG+++ V   NG ++L+G+      A +AE++   F 
Sbjct: 104 VGIIDIEVTLDTKLLSSTIRQSVPGSSVKVTSANGRIVLSGSATDAVAATQAEQIASRFA 163

Query: 168 GKETTVVSRLLMATPLQVMLQVKIAEVSRDVGHKIGTNFASADR-SGGNLGFIGGGGRAF 226
           G E  V++ + + +  QV L V+  E++RDVG ++GT  ++A   S G++ F     RA 
Sbjct: 164 GDEE-VINSIKITSSQQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEF-NSSPRAT 221

Query: 227 STYTKPEIDTATGLITKPAEWAFSTPSDGSYSLGGVARLFGMDIAGALDLAESSGLATTL 286
           S                      +TP+ GS     +   + +D+A  +D  E  G+A  L
Sbjct: 222 S----------------------NTPA-GSLIGSLIGEGYSVDVA--IDALEDRGMARRL 256

Query: 287 AQPNLTALSGETASFLAGGEYPYTVNNGPSSGNSIQFKQYGVQLAFTPTVLADGRISLRV 346
           A+PNL A SGET+SFLAGGE+P  ++    +  ++ +K++GV L FTPTVL+DG I+L +
Sbjct: 257 AEPNLIARSGETSSFLAGGEFPIPISEQDGT-ITVSYKKFGVGLDFTPTVLSDGLIALDI 315

Query: 347 RPTVSSLDFSVSSTV-----PALKSRTAETTVELGSGQGFMIAGLLNNETGNTVNKVPGL 401
            P VS++D + S  V     P    R A T+V+L SGQ FMIAGLL +E      +VPGL
Sbjct: 316 EPEVSAIDNTASYRVGNIAIPGFSVRRARTSVDLKSGQSFMIAGLLQSENNLITQRVPGL 375

Query: 402 GNIPVLGSLFKSRSFQRNETELVIVVTPYLVKPVN-ASDIRLPTDGFRNANVGQGLFLEQ 460
           G +P+LG+LF S+++QR ET+LVI+VTP+LVKP++    +  P+D  +     +  FL  
Sbjct: 376 GQLPILGALFSSKAYQRRETDLVIIVTPHLVKPIDPLKKVASPSDRTKRPTEAE-FFLGN 434

Query: 461 MHD------GVSGAQPNMPTRAPGS 479
           + +      G S ++     RAP S
Sbjct: 435 IDEVEVNGRGRSASRQARVVRAPSS 459