Pairwise Alignments

Query, 517 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Sphingobium sp. HT1-2

Subject, 684 a.a., type IV pilus biogenesis protein PilQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.7 bits (208), Expect = 1e-20
 Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 29/311 (9%)

Query: 128 LAMPGANIAVNKMNGMVLLTGTIKAPEDAAEAERLTQAFVGKETTVVSRLLMATPL-QVM 186
           L  P  ++AV++    VL+  T +  E+     RL +             ++  P+ QV+
Sbjct: 393 LLSPRGSVAVDERTNTVLVKDTAEIIENI---HRLVE-------------VLDIPIRQVL 436

Query: 187 LQVKIAEVSRDVGHKIGTNFASADRSG--GNLGFIGGGGRAFSTYTKPEIDTATGLITKP 244
           ++ ++  V  DV   +G  +   D+ G  G  G + G G   +    P +D     +  P
Sbjct: 437 IESRMVTVKDDVSEDLGIRWGVTDQQGNKGTSGSLEGAGD-IANGKVPSLDNRLN-VNLP 494

Query: 245 AEWAFSTPSDGSYSLGGVARLFGMDIAGALDLAESSGLATTLAQPNLTALSGETASFLAG 304
           A  A + P+  ++ +  +A    +D+   L   E       +A P +T  + + A    G
Sbjct: 495 A--AVTNPTSIAFHVAKLADGTILDLE--LSALEQENKGEIIASPRITTSNQKAAYIEQG 550

Query: 305 GEYPYTVNNGPSSGNSIQFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSVSS-TVPA 363
            E PY V +  S   S+ FK+  + L  TP +  D R+ L +  T  S   +V + T PA
Sbjct: 551 VEIPY-VQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 609

Query: 364 LKSRTAE--TTVELGSGQGFMIAGLLNNETGNTVNKVPGLGNIPVLGSLFKSRSFQRNET 421
           +   T    T V + +G+  ++ G+      + V+KVP LG+IP++G LF++ + +    
Sbjct: 610 VAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 669

Query: 422 ELVIVVTPYLV 432
           EL+I VTP +V
Sbjct: 670 ELLIFVTPKIV 680