Pairwise Alignments

Query, 480 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6- diaminopimelate ligase (EC 6.3.2.13) from Sphingobium sp. HT1-2

Subject, 455 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase (RefSeq) from Shewanella amazonensis SB2B

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 98/387 (25%), Positives = 172/387 (44%), Gaps = 31/387 (8%)

Query: 5   SLIEELGVEVGGNTGLDTSVTGFAIDNRKVAPGTIFGAFQGLRVNGEDFIADAVKAGAVA 64
           SL +      G   G D  V+    D+RK+  G++F A +G R +G +F   A  AGA A
Sbjct: 5   SLTQLAAATHGRLCGEDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAGASA 64

Query: 65  IVARPEAKVEGAVHIADANPRRLLAQLAARYFAPFPDVTVAVTGTNGKTSTVELARQLWR 124
           ++   E  +     +  A+ ++ + Q+ A        V VA+TG+NGKTS  E+   +  
Sbjct: 65  LLVERELPL-ALPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKTSVKEMVATV-- 121

Query: 125 MLGHKSASIGTLGVTTSVDQVSTGLTTPDIVTFLANMSGLKREGITHAAFE--ASSHGLD 182
            L    + + T G   +  ++   LT   +            +G  +  FE  A+  G  
Sbjct: 122 -LSQHHSVLFTAGNFNN--EIGVPLTLLRL-----------EQGHEYGVFELGANHKGEI 167

Query: 183 QYRTEGLPVAAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVGDGGAAVIWADDEWSDK 242
            Y +  +  +     N+   HL+  G      +AK  ++  +  DG   ++  DD +++ 
Sbjct: 168 DYTSSLVRPSVSLVNNVGSAHLEGFGSEAGVAEAKSEIYLHLAQDG-VGIVNLDDRYAET 226

Query: 243 AIQRATKRGLRVLSVGV-QGQALRLANRTPTQLGQ-TLEIEADGKIYKVNLPLIGAYQAA 300
            + +   +G RVL+ G+  G  +     T    G+ +  +   G    V+LPL G +Q +
Sbjct: 227 MLNKL--KGKRVLTFGLGAGAEITAREVTADAFGRYSFYLCHGGDHVTVSLPLAGKHQVS 284

Query: 301 NALTAAGLVIATGGDTAKVLELLGRVQPVRGRLERAVISKAGAPVYVD--YAHTPDGLRA 358
           NAL  A + IA G    ++   L ++ PV+GR+   +  + G  + VD  Y   P+ + A
Sbjct: 285 NALATAAICIALGLPLQEIAAGLAKLAPVKGRM---MPRQLGRLLLVDDSYNANPNSVGA 341

Query: 359 AIEALRPHTRGKLIAL--FGAGGDRDA 383
           AI+ L+  +  + + L   G  GD  A
Sbjct: 342 AIDWLKEISTNRTLVLGDLGELGDNAA 368