Pairwise Alignments

Query, 480 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6- diaminopimelate ligase (EC 6.3.2.13) from Sphingobium sp. HT1-2

Subject, 456 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (RefSeq) from Shewanella loihica PV-4

 Score = 95.1 bits (235), Expect = 4e-24
 Identities = 102/385 (26%), Positives = 172/385 (44%), Gaps = 33/385 (8%)

Query: 1   MRLGSLIEELGVEVGGNTGLDTSVTGFAIDNRKVAPGTIFGAFQGLRVNGEDFIADAVKA 60
           ++L  L + L  +   + G D SV+  + D+R V   T+F A +G R +  DF A AV  
Sbjct: 4   LKLSELAKVLNAK---HIGDDLSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVMD 60

Query: 61  GAVAIVARPEAKVEGAVHIADANPRRLLAQLAARYFAPFPDVTVAVTGTNGKTSTVELAR 120
           GA A++   E  +  A  +  AN ++ + Q+ A         +VA+TG+NGKTS  E+  
Sbjct: 61  GASALLVERELPI-AAPQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKTSVKEMVA 119

Query: 121 QLWRMLGHKSASIGTLGVTTSVDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEASSHG 180
            +         + G        ++V   LT       L  +      G+    FE  ++ 
Sbjct: 120 TILSTQHQVLYTAGNFN-----NEVGVPLT-------LLRLEPQHEYGV----FELGANH 163

Query: 181 LDQ--YRTEGLPVAAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVGDGGAAVIWADDE 238
           L +  Y +  +        N++  HL+  G ++    AK  +F  +  DG  AVI ADD 
Sbjct: 164 LGEINYTSSLVQPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDG-VAVINADDA 222

Query: 239 WSDKAIQRATKRGLRVLSVGVQGQALRLA--NRTPTQLG-QTLEIEADGKIYKVNLPLIG 295
           ++D  + R        LS   QG    ++    +   LG     I    +   V+LPL G
Sbjct: 223 FAD--VMRRAAASHTQLSFSSQGNPADVSADELSADALGCYRFRIAYLDEQRTVSLPLSG 280

Query: 296 AYQAANALTAAGLVIATGGDTAKVLELLGRVQPVRGRLERAVISKAGAPVYVD--YAHTP 353
            +Q +NAL A  + +A G    ++++ L R+QPV+GR++    ++ G  + +D  Y   P
Sbjct: 281 RHQVSNALAATSICLALGLSLDEIVQGLMRLQPVKGRMQP---TRLGRFLLIDDTYNANP 337

Query: 354 DGLRAAIEALRPHTRGKLIALFGAG 378
             + AAI+ L+     + + L   G
Sbjct: 338 ASVGAAIDWLQEIEGNRCLVLGDLG 362