Pairwise Alignments

Query, 309 a.a., Conjugative transfer protein TrbB from Sphingobium sp. HT1-2

Subject, 477 a.a., type II/IV secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  154 bits (389), Expect = 4e-42
 Identities = 106/303 (34%), Positives = 164/303 (54%), Gaps = 25/303 (8%)

Query: 1   MKEPTVVEIMVNPDGALRLDRLGSG-RIDTEVRLAPDQVERIIRLVASHVRAEVHAGQPI 59
           + +PTV +I+VN    + ++R G   +++T  +   D + +II  + S +   V    P+
Sbjct: 135 LHDPTVNDILVNNYRQIYVERRGKLIKVNTRFQ-DDDHLRKIIDRIVSRIGRRVDESSPM 193

Query: 60  ISAELPPHADGRAGERFEGVLPPVS-SAPCFSIRKPAQRLHTLADYVADGLMGETVACAL 118
           + A L   ADG    R   ++PP++   P  SIR+ ++    L D +  G +   +   L
Sbjct: 194 VDARL---ADG---SRVNAIIPPLALDGPSLSIRRFSKDPLELHDLIGFGALTPEMGEVL 247

Query: 119 RAAVTERLNILVAGGTSSGKTTLANALLAEMAPENSAVDSRVILIEDTRELQCPLPDTVA 178
           +  V  RLNI+V+GGT SGKTT+ N L +   P     D R++ IED  ELQ      V 
Sbjct: 248 QGIVKARLNIIVSGGTGSGKTTMLNCL-SRFVPH----DERIVTIEDAAELQLKQEHVVR 302

Query: 179 LRTRPPH------VAMTDLVRSTMRLRPDRIIVGEVRGPEALDMLKAWNTGHPGGVATIH 232
           L TRP +      V   DLV++ +R+RPDRIIVGEVR  E LDML+A NTGH G + TIH
Sbjct: 303 LETRPANIEGHGEVTARDLVKNCLRMRPDRIIVGEVRSGEVLDMLQAMNTGHDGSLTTIH 362

Query: 233 ANSAAAALTRLEQLCQEAVITVP----RPLIAEAIDVVVFIAG-RGVDRRVATVARVTGL 287
           AN+    L RLE +   A + +     +  I+ A+DV++ ++      R++ ++  +TG+
Sbjct: 363 ANTPRDCLMRLETMVAMAGLNISTLSLKRYISSAVDVIIQVSRLSDGSRKLTSLMELTGM 422

Query: 288 APE 290
             E
Sbjct: 423 EGE 425