Pairwise Alignments

Query, 199 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 57.0 bits (136), Expect = 2e-13
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 18  AILPHEGALRSRLRRVVSHRQDVDDIVAECMTRAYANGDIHRAQSGKAF---LFQIARNL 74
           A LP+   LR     +   R   DD+V     RA A+ +  R + G  F   +F+I RNL
Sbjct: 14  AFLPN---LRRFAISLCGSRDVADDLVQSACERALASAE--RFEPGTRFDAWIFRILRNL 68

Query: 75  LIDEARREKIVSL--ELVAELDVLQTDNSTEEALHARDELRHLQAILDTLPAQCRRAFIL 132
            ID+ RR+K   +  ++    D+    +S E    AR  L+ +   +  LP + R   +L
Sbjct: 69  WIDQVRRQKTAGVQDDITERHDI--AGSSGERETEARLTLKTVAEAITELPDEQREVVLL 126

Query: 133 RRVHEKSVKEIAEEMQLSVFTVDKHLTRAAVKIMQAIGQFEGSGFGWSLQ 182
             V E S +E A+ M + + TV   L RA   + +A G  + +G   S++
Sbjct: 127 VCVEELSYREAADVMGIPIGTVMSRLMRARRSLAEAAGITQATGRSQSMK 176