Pairwise Alignments

Query, 971 a.a., Excinuclease ABC subunit A from Sphingobium sp. HT1-2

Subject, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

 Score = 1096 bits (2835), Expect = 0.0
 Identities = 567/961 (59%), Positives = 709/961 (73%), Gaps = 28/961 (2%)

Query: 6   ISVRGAREHNLKGVDVDLPRDSLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 65
           I VRGAR HNLK +++ +PRD LIVITGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 66  FLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIPYSPAT 125
           FL +M+KPDV+HIEGLSPAISIEQK+TS NPRSTV T+TE+YDY+RLL+ARVG P  P  
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123

Query: 126 GEPISAQTVSQMVDRVMLLPEGTRFYLLAPVVRGRKGEYRKELAEWQKAGYTRVRIDGEL 185
             P+ AQT+SQMVD+V+ LPEG++  LLA +V+ RKGE+ K L      G+ R RIDGE 
Sbjct: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183

Query: 186 YLIEDAPALDKKYKHDIEVVVDRLAVNADMATRLADSFEQALKLADGLAFVDLAEDVVPG 245
             + D P L+   KH IEV+VDR  V +D+  RLA+SFE AL+L+ G+  V   E    G
Sbjct: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEG--DG 241

Query: 246 REDKAQSAGKMKNAGIPANRIVFSEKFACPVSGFTIPEIEPRLFSFNAPMGACPACDGLG 305
            E                   +FS  FACP  G+++ E+EPRLFSFN P GACP CDGLG
Sbjct: 242 EEQ------------------IFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLG 283

Query: 306 ERQEFDPELVVPNEALSLKKGAVVPWAKSNPPSPYYMQVLGSLAKEFGFSLDTPWAELPG 365
            +Q FDP+ V+ +  LSL +GA+  W + N    YY Q+L +LA+ + F + TP+ +L  
Sbjct: 284 VQQYFDPDRVIQDANLSLAQGAIRGWDQKNF---YYFQMLTALAEHYDFDVHTPFNKLSK 340

Query: 366 EVKLIILHGTGGKPVTLRFVDGKKSYEVEK-PFEGVIGNLNRRLAQTESAWMREELSKYQ 424
           +++ IILHG+G   +  ++++ +    ++K PFEG++ NL RR   TES  +REEL+KY 
Sbjct: 341 KIQEIILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYI 400

Query: 425 TAMPCETCHGARLKPEALAVKIAGEDISVSTRRSVVDALAFFTAMPDALNDQQNQIARAI 484
           +  PC +C G RLK EA  V I    +      S+ DAL FF  +   L  Q+ QIA  +
Sbjct: 401 SNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELK--LEGQRAQIAEKV 458

Query: 485 LKEIVERLGFLNNVGLDYLNLDRTSGTLSGGESQRIRLASQIGSGLSGVLYVLDEPSIGL 544
           +KEI +RL FL NVGL+YLNL R++ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGL
Sbjct: 459 MKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGL 518

Query: 545 HQRDNDRLLVTLKRLRDLGNSVIVVEHDEDAIRAADYIVDMGPGAGVHGGTIVAQGTLPE 604
           HQRDN+RLL TL  LR+LGN+V+VVEHDEDAIR AD+++D+GPGAGVHGG +VA+G + E
Sbjct: 519 HQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEE 578

Query: 605 LLAHKDSLTADYLNGTRRIEVPAKRRKGSGKK-LTVHNARANNLTGVTASIPLGTFTCIT 663
           ++A+ +SLT  YL+G ++I VP +R     KK + +  A  NNL  V  SIP+G FTC+T
Sbjct: 579 IIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVT 638

Query: 664 GVSGSGKSSFTIDTLYAASARTLNGARIVA-GPHDKITGLENCDKVIDIDQSPIGRTPRS 722
           GVSGSGKS+   DT +  +   LNGA      P+  I GLE+ DKVIDIDQSPIGRTPRS
Sbjct: 639 GVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRS 698

Query: 723 NPATYTGAFTNIRDWFAGLPEAQARGYKPGRFSFNVKGGRCEACQGDGVLKIEMHFLPDV 782
           NPATYTG FT IR+ FAG  E+++RGY+PGRFSFNV+GGRCEACQGDGV+K+EMHFLPDV
Sbjct: 699 NPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDV 758

Query: 783 YVTCDVCHGARYNRETLEVKFKGMSIADILDMTVEDAVEFFKAVPPIRDKMAMLAEVGLG 842
           YV CDVC G RYNRETLEV++KG +I ++LDMTVEDA EFF  VP I  K+  L +VGL 
Sbjct: 759 YVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLS 818

Query: 843 YIKVGQQATTLSGGEAQRVKLAKELSRRATGNTLYILDEPTTGLHFEDVRKLLEVLHALV 902
           YI++GQ ATTLSGGEAQRVKLA+ELS+R TG TLYILDEPTTGLHF D+++LL VLH L 
Sbjct: 819 YIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLR 878

Query: 903 EQGNSVVVIEHNLDVIKTADYIIDMGPEGGVKGGEVVAQGTPEQVVKEKRSFTGRYLAPL 962
           + GN+VVVIEHNLDVIKTAD+IID+GPEGG  GG ++A+GTPE V + + S T R+L PL
Sbjct: 879 DHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPL 938

Query: 963 L 963
           L
Sbjct: 939 L 939



 Score = 57.0 bits (136), Expect = 6e-12
 Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 636 KLTVHNARANNLTGVTASIPLGTFTCITGVSGSGKSSFTIDTLYAASAR----TLNG-AR 690
           K+ V  AR +NL  +  +IP      ITG+SGSGKSS   DTLYA   R    +L+  AR
Sbjct: 3   KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62

Query: 691 IVAGPHDK--ITGLENCDKVIDIDQSPIGRTPRSNPATYTGAFTNIRDWFAGLPE 743
                 +K  +  +E     I I+Q      PRS   T T  +  +R  +A + E
Sbjct: 63  QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGE 117