Pairwise Alignments

Query, 541 a.a., DNA polymerase III subunits gamma and tau (EC 2.7.7.7) from Sphingobium sp. HT1-2

Subject, 659 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  446 bits (1147), Expect = e-129
 Identities = 274/599 (45%), Positives = 353/599 (58%), Gaps = 79/599 (13%)

Query: 7   PYRVLARKYRPRNFRELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTARLIAKA 66
           PYRVLARKYRP +F  LIGQ+A+V+TL NAI  GRLA A+++TGVRGVGKT+TARLIA+A
Sbjct: 37  PYRVLARKYRPASFDALIGQEALVRTLTNAIDSGRLAQAWMLTGVRGVGKTTTARLIARA 96

Query: 67  LNCIGPDGQGGPTIDPCGVCEPCMAIAEGRHIDVVEMDAASHTGVDDVREIIEAVRYAAV 126
           LNC+G DG+GG TI PCGVCE C AIAE RH+DV+EMDAAS TGV D+REI++ VRY   
Sbjct: 97  LNCVGADGKGGVTITPCGVCEHCKAIAEDRHVDVLEMDAASRTGVGDIREILDGVRYRPA 156

Query: 127 SARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTVLSRCQRFDLR 186
            AR K+YIIDEVHMLS  AFNALLKTLEEPP HVKF+FATTE+ KVPVTVLSRCQRFDLR
Sbjct: 157 VARTKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLR 216

Query: 187 RIPAEMLAGHFAHVVEAEKVAAEPDALSLIAQAAEGSARDGLSILDQAIAHAEMGEGEPM 246
           R+ A  L+GHF  +   E     P AL+LIA+AA+GS RDGLS+LDQAIAH     G   
Sbjct: 217 RVSAAELSGHFLRIAGLEGAEIAPSALTLIARAADGSVRDGLSLLDQAIAH-----GGGT 271

Query: 247 VTAAQVREMLGLSDRGSTRRLLGLLLEGDTAALLGGVRDQYALGVEPLSLMRGLLELVHA 306
           V+ AQV EMLGL+DR     LL  LL G  A  L  +  QYALG +PL +++ LL+LVH 
Sbjct: 272 VSEAQVAEMLGLADRARIFDLLDALLAGRIAESLDLLDRQYALGADPLVIVQDLLDLVHW 331

Query: 307 VTLVK----AGRDIATPGQSDEERGALADWASQIGFGPLHRLWQLMLKGHDEVATAALPI 362
           +T VK    +  D A P +++  RG     A ++    L+R WQ++LKG  E   A +P+
Sbjct: 332 MTRVKVVPVSAEDAAVP-EAERTRGRA--MAERLSMAVLNRCWQILLKGLGEARGAPVPL 388

Query: 363 EACEMALLRVMHAATMPDPSDLARMLQGGVPTAAP------------------------- 397
           +A EM L+R+ +A+ +P P +  +M+ GG   AAP                         
Sbjct: 389 QAVEMVLIRLAYASDLPTPEEALKMIAGGAQPAAPRPPAPHSPAGPPPAAPPPPSPPSRA 448

Query: 398 -----------AMLGQASAAAAPA-------------PEPASSLPA--------TFEDLI 425
                      +  G  + A AP              P P ++ PA        +F  L+
Sbjct: 449 DEPPRPSRPSQSNAGGGALAVAPVEVAPDPPPPPPPPPAPPAADPAGAFDPVPRSFALLV 508

Query: 426 EAFWQKSKGHLAQEMHDCVGIIRYDPP--MLEYRGTASLSPDFATRIIPALREVTGVAWT 483
           + F +K +  +   ++  V ++ YDP   +LE     +     A +I   L E TG  W 
Sbjct: 509 DLFRRKREAVVTGHLYRDVELVGYDPEAGLLEIHPLPAAPAKLAGQITRLLGEWTGRRWM 568

Query: 484 VTQGEGEAKPTLLANEQRQLADSRAAILETPVVKAAMDAFPDAEL-VHSDEPEQWSAEA 541
           VT  +   +PTL    Q       A I   P+VKA +D FP A +    + P   +AEA
Sbjct: 569 VTLTDRPGQPTLHDATQ-------ADIHAHPLVKAVLDRFPGAVIGTIREHPGAVAAEA 620