Pairwise Alignments

Query, 570 a.a., SSU ribosomal protein S1p from Sphingobium sp. HT1-2

Subject, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

 Score = 67.0 bits (162), Expect = 3e-15
 Identities = 31/82 (37%), Positives = 58/82 (70%), Gaps = 2/82 (2%)

Query: 194 IQTLAEGQIIEGVVKNITDYGAFVDLG-GIDGLLHVTDLSYKRINHPNEMINIGDTVRVQ 252
           +  L  G ++EGVV N+ ++GAFVD+G   DGL+H++ L+ + I+ P E++  GD V+V+
Sbjct: 645 VSDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVK 704

Query: 253 IIRINRETQRISLGMKQLENDP 274
           ++ ++ + +RI+L M+ L ++P
Sbjct: 705 VMEVDVQRKRIALSMR-LNDEP 725



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 284 VGAKLSGRVTNITEYGAFVELEPGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVIVLEV 343
           VG  L G V+N+  +GAFV++    +GLVH+S ++  +    P ++V     V+V V+EV
Sbjct: 650 VGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALT-DRFISDPREVVKAGDIVKVKVMEV 708

Query: 344 DPEKRRISLGLKQAQSNPWDSFAER 368
           D +++RI+L ++       D+ ++R
Sbjct: 709 DVQRKRIALSMRLNDEPGQDNRSQR 733



 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 371 IGSTVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWGISGEDALALHRKGETVQAVVLDI 430
           +G  +EG V N   FG F+ +    DG+VH+S +       D   + + G+ V+  V+++
Sbjct: 650 VGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFI-SDPREVVKAGDIVKVKVMEV 708

Query: 431 DVEKERISLGMKQLERGG 448
           DV+++RI+L M+  +  G
Sbjct: 709 DVQRKRIALSMRLNDEPG 726