Pairwise Alignments

Query, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas fluorescens FW300-N2E2

 Score =  385 bits (988), Expect = e-111
 Identities = 236/655 (36%), Positives = 358/655 (54%), Gaps = 37/655 (5%)

Query: 17  LNEPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATQRAWPSEILAVTFTNKAARE 76
           LN  Q+EAV    GP+LVLAGAG+GKT+ +T ++AHL+         I+A+TFTNKAARE
Sbjct: 4   LNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAARE 63

Query: 77  MRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQLIQ 136
           M+ERVG ++         + TFH +   ++R+    +G +  F+I D  D   LM  ++Q
Sbjct: 64  MKERVGGLLRAGEGRGLTVCTFHNLGLNIIRKEHARLGYKPGFSIFDETDVKALMTDIMQ 123

Query: 137 AE-----GIDEKRWPARQLAGLIDQWKNKGLTPEEVGAGEAEGYAHGKGQK---LYAAYQ 188
            E     G+DE       +  +I  WKN  + P +      E   + K Q    +Y  YQ
Sbjct: 124 KEYSGDDGVDE-------IKNMIGSWKNDLILPPQA----LENARNPKEQTAAIVYTHYQ 172

Query: 189 ARLREVNACDFGDLLLHSLTILKRHRDVLEQYQQRFKYIMVDEYQDTNSSQYLWLRLLAQ 248
             L+  NA DF DL+L  + + + H D+LE++Q + +Y++VDEYQDTN+SQYL ++LL  
Sbjct: 173 RTLKAFNAVDFDDLILLPVKLFQDHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG 232

Query: 249 TRKNICCVGDDDQSIYSWRGAEVANILRFEKDFPGAVIVRLEQNYRSTPHILGAASGVIA 308
           TR     VGDDDQSIY+WRGA   N++  + D+P   +V LEQNYRST  IL  A+ +I+
Sbjct: 233 TRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLIS 292

Query: 309 ENGNRLGKTLWTDIDVGEKVRVLGVWDGPEEARRVGDEIEAI-ARAGGSLDEVAILVRAQ 367
            N +   K LW+++  G+++RV+   +   EA RV  EI ++  R      + AIL R  
Sbjct: 293 NNPHEFEKQLWSEMGHGDEIRVIRCRNEDAEAERVAMEILSLHLRTDRPYSDFAILYRGN 352

Query: 368 HQTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRG 427
           +Q +  E +     +PYR+ GG  F+ R E++D +AY RL+  P DD AF R++NVP+R 
Sbjct: 353 YQAKLIELKLQHHQIPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVINVPRRE 412

Query: 428 LGDKAVEKLHRLARAEGIPLALAAARILDTDELTPQARRSLGAFIGDLARWRDRAAQLPH 487
           +G   +EKL   A    I +  A   I   + L  +    L  F   + + R++ A    
Sbjct: 413 IGSTTLEKLGNYATERKISMYAATDEIGLGEHLDSRFTDRLARFKRFMDKVREQCAGEDP 472

Query: 488 AELARQILDESGYTATLQAERSTESAG--RLENLSELTRAMEE------------YETLG 533
               R ++ +  Y   L+   S++ A   R+ N+  L  A++              + +G
Sbjct: 473 ISALRSMVMDIDYENWLRTNSSSDKAADYRMSNVWFLIEALKNTLEKDEDGDMTVEDAIG 532

Query: 534 AFLEHVSLVMDNEAQQDEQKLTIMTIHAAKGLEFDNVFLAGWEEGIFPSQRALDEGGLNS 593
             +    L    E +   + + +MT+HA+KGLEF  VF+ G EE I P + +++    ++
Sbjct: 533 KLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIE---ADT 589

Query: 594 LEEERRLAYVAITRARKRCTILHAANRRIYGQWTSSIPSRFVGELPPEHVDEESS 648
           +EEERRLAYV ITRAR+      AA R+ YG+     PSRF+ ELPP+ +  E +
Sbjct: 590 IEEERRLAYVGITRARQTLAFTFAAKRKQYGEVIDCAPSRFLDELPPDDLAWEGN 644