Pairwise Alignments

Query, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

Subject, 689 a.a., UvrD2 DNA helicase from Sinorhizobium meliloti 1021

 Score =  268 bits (684), Expect = 9e-76
 Identities = 217/662 (32%), Positives = 319/662 (48%), Gaps = 59/662 (8%)

Query: 13  YLKGLNEPQREAVL--------TTEGPVLVLAGAGTGKTAALTARLAHLVATQRAWPSEI 64
           +L+ LNE QR AV            GP+L++AGAG+GKT  L  R+AHL+    A P  I
Sbjct: 6   HLEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVNG-ADPRRI 64

Query: 65  LAVTFTNKAAREMRERV--------GRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQ 116
           L +TF+ +AA EM  RV        GR  G   + + W GTFH I A++LR +AE +GL 
Sbjct: 65  LLMTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLN 124

Query: 117 SNFTILDTDDQLRLMKQLIQAEGID--EKRWPARQLA-GLIDQWKNKGLTPEEVGAGEAE 173
           + FTI D +D   L+  +    G    E R+P +     +  +  N  +   EV      
Sbjct: 125 AEFTIHDREDSADLINLIRHELGFSKTESRFPTKGTCLAIYSRTVNAEMRLNEVLRSWYP 184

Query: 174 GYAHGKGQ--KLYAAYQARLREVNACDFGDLLLHSLTILKRHRDVLEQYQQRFKYIMVDE 231
             A  + Q  +L+A Y    +  N  D+ DLLL+   ++     + +    RF Y++VDE
Sbjct: 185 WVAGWEQQLQELFAGYVEAKQAQNVLDYDDLLLYWAQMVS-DASLADDIGNRFDYVLVDE 243

Query: 232 YQDTNSSQYLWLRLLAQTRKNICCVGDDDQSIYSWRGAEVANILRFEKDF-PGAVIVRLE 290
           YQDTN  Q   L  L    + +  VGDD QSIYS+R A V NIL F K F P A IV L+
Sbjct: 244 YQDTNKLQSSVLLALKPDGRGLTVVGDDAQSIYSFRAATVRNILDFPKQFAPAAEIVTLD 303

Query: 291 QNYRSTPHILGAASGVIAENGNRLGKTLWTDIDVGEKVRVLGVWDGPEEARRVGDEIEAI 350
           +NYRST  IL AA+GVI     R  K LWTD +  E+ ++L V D  ++A  + +++ A 
Sbjct: 304 RNYRSTQPILAAANGVIDLARERFTKNLWTDRESAERPKLLTVKDEADQANCIVEQVLAN 363

Query: 351 ARAGGSLDEVAILVRAQHQTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQ 410
             +G  L + A+L R    +   E    +  +P+   GG +F + A ++D LA LR    
Sbjct: 364 RESGMLLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQN 423

Query: 411 PADDLAFERIVNVPKRGLGDKAVEKLHRLARAEGIPLALAAARILDTDELTPQARRSLGA 470
           P D +A  R++ +   G+G +   K+     A+  PL       L      P++     +
Sbjct: 424 PRDRVAGFRLLQM-LPGVGPQTAGKILDTIAADPEPL-----MALGEVPAPPRSGTDWMS 477

Query: 471 FIGDLARWRDRAAQLP-HAELARQILDESGYTATLQAERSTESA-GRLENLSELTRAMEE 528
            +  L   R   +  P   E+AR   +          ER  E A  R  +L +L +    
Sbjct: 478 LVELLQALRKPGSAWPTEIEMARMWYEP-------HLERIHEDAETRRADLVQLEQIAAG 530

Query: 529 YETLGAFLEHVSLVMDNEAQQ-------DEQKLTIMTIHAAKGLEFDNVFLAGWEEGIFP 581
           Y +   FL  ++L   +           DE  L + TIH+AKG E+ +VF+    +G  P
Sbjct: 531 YPSRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWRSVFMLNVVDGCIP 590

Query: 582 SQRALDEGGLNSLEEERRLAYVAITRARKRCTIL----------HA-ANRRIYGQWTSSI 630
           S   L  G  + LEEERRL YV +TRA+ +  ++          HA  +R +Y   T  I
Sbjct: 591 SD--LATGTSHELEEERRLLYVGMTRAKDQLALMVPQRFFTGGQHAQGDRHVYASRTRFI 648

Query: 631 PS 632
           P+
Sbjct: 649 PA 650