Pairwise Alignments

Query, 455 a.a., LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) from Sphingobium sp. HT1-2

Subject, 411 a.a., Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

 Score =  135 bits (341), Expect = 2e-36
 Identities = 91/249 (36%), Positives = 135/249 (54%), Gaps = 18/249 (7%)

Query: 216 QRIAKLLARAGIASRREIERMIEEGRIARDGVTIDTPATLLTSLH-GVTVDGDPV----A 270
           +++ K+LAR G+ SRR++E  I +GRI  +G   D    L   +H  +T+DG  +    A
Sbjct: 17  EKLQKVLARIGVGSRRDVEAWITQGRIKVNGK--DAILGLRVDMHDAITIDGKVIKREEA 74

Query: 271 APAPARLFLFHKPTGFLTTERDPAGRPTIYDILPDDLP-RLMPIGRLDMNTEGLLLLTTD 329
           A    R+ +++KP G + T  DP GRPT++D +P     R + IGRLD+NT GLL+ TTD
Sbjct: 75  AETVRRVIMYNKPDGEICTRDDPEGRPTVFDKMPRPKEGRWINIGRLDINTTGLLMFTTD 134

Query: 330 GEFKREMELPATGVPRTYRARAFGEVSQQQLEDLFDGIEIDGIQYGPIEANLERRT---- 385
           GE    +  P+  + R Y  R  GEV  + +E L  G+ ++    GP      ++     
Sbjct: 135 GELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVVLED---GPARFTDIKQAPGGE 191

Query: 386 GRNQWIEMTLTEGKNREVRRVLEHFELKVNRLIRTSYGP-FELGELAGGAVEEVRQH--D 442
           G N W    + EG+NREVRR+ E   L V+RL R  +GP F   +L  G   E+ Q+  D
Sbjct: 192 GFNHWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLNSDLPMGRWREMSQYEVD 251

Query: 443 LVAFRSSLK 451
           ++A    LK
Sbjct: 252 ILAAEVGLK 260



 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 50/158 (31%), Positives = 63/158 (39%), Gaps = 40/158 (25%)

Query: 48  RFDSRSEGRSERPS---PRGERPDRGPRPDRNGPGEGRGGRFAGNREESRGERPARGARP 104
           R  SR  G++ER     P  E    GPRP R                +  GERPAR   P
Sbjct: 280 RKSSRPMGKTERVRTLRPAAEGAPTGPRPSRE--------------PQIEGERPARKPAP 325

Query: 105 DRNAAEGRGRFGEARGERSERPARDRPDRAAQPDRTDRPARSG-----RPAEGKRPERAA 159
            ++        GE RG R+ RPA  R +R    +    PA  G     RPA+ KRP + A
Sbjct: 326 RQD--------GE-RGPRTPRPANGRTERG---EGRGAPAGRGTPVADRPADTKRPAKPA 373

Query: 160 FGDRPA-----RPRREGRTEGRMGGTSYPPRRPGSKKP 192
              RP      R    G+  G   G+   P   G +KP
Sbjct: 374 PKKRPGIVLADRDAPSGKRRGAPAGSGQRPGF-GRRKP 410



 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 44/154 (28%), Positives = 53/154 (34%), Gaps = 31/154 (20%)

Query: 20  RPSGPGSRGGADRGTGRG-PARSDSRNEGRFDSRSEGRSERPSPRGERPDRGPRP--DRN 76
           RP G   R    R    G P       E + +     R   P   GER  R PRP   R 
Sbjct: 284 RPMGKTERVRTLRPAAEGAPTGPRPSREPQIEGERPARKPAPRQDGERGPRTPRPANGRT 343

Query: 77  GPGEGRGGRFAGNREESRGERPARGARPDRNAAEGRGRFGEARGERSERPARDRPDRAAQ 136
             GEGRG                        A  GRG     R   ++RPA+  P +   
Sbjct: 344 ERGEGRG------------------------APAGRGTPVADRPADTKRPAKPAPKKRPG 379

Query: 137 PDRTDRPARSGRPAEGKRPERAAFGDRPARPRRE 170
               DR A SG+    +R   A  G RP   RR+
Sbjct: 380 IVLADRDAPSGK----RRGAPAGSGQRPGFGRRK 409