Pairwise Alignments

Query, 438 a.a., hypothetical protein from Sphingobium sp. HT1-2

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  247 bits (630), Expect = 7e-70
 Identities = 158/476 (33%), Positives = 234/476 (49%), Gaps = 58/476 (12%)

Query: 9   IALVDDDDDLRAAMAQTLTLAGHEVRAFARAADALAAIDADFPGVVVSDVRMPHMSGIDL 68
           I +VDDD  LR +  + L + GH+VR  +     L  +  + P  V+ DVRMP M+G+D 
Sbjct: 4   ILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGLDA 63

Query: 69  FRALHARDAELPVILVTGHGDVPMAVDALKAGAWDFLTKPFNPDALLASVARASEKRLLV 128
            +AL   DA LPVI++T +     A++A K GA+D++ KPF+   +LA + +A E     
Sbjct: 64  LKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDKAVE----- 118

Query: 129 IENRRLRAMV-------DTAVASPLIGHSPAIERLRDMVATLADTNIDILVEGETGTGKE 181
              RR+R  V       D   A  L+G S A+  +   +   A T+  +LV GE+GTGKE
Sbjct: 119 -AGRRMRGRVAMTPEPGDGGDAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGESGTGKE 177

Query: 182 LVARMIHQRSRRASAQFVSIACAAVPDAIAETSLHGESLAGRAPLE----GRLARAHQGT 237
           LVAR I+Q S RA   ++ I C A+PD + E+ L G              G++ +A  GT
Sbjct: 178 LVARAIYQHSLRAERPYLVINCVAIPDTLLESELFGYEKGAFTGATHRRVGKIEQASGGT 237

Query: 238 LFLDDVDQSGPALQAHLIQFLEDRLVRPVGAREPQPVDLRVIGCMTQQGQAAT----IQP 293
           +FLD++      +QA L++ L++R +  +G RE  PVD+R+I       +AA      + 
Sbjct: 238 VFLDEIGDMPLGIQAKLLRLLQERQIERLGGRETIPVDVRIIAATNTDLEAAVADGRFRE 297

Query: 294 ALLYRLAAVRLHIPPLRERREDIPLIFAHLLDAAARRFRRTVPPVSRAVLAHLLDHDWPG 353
            L YRL  V L +PPLRERREDIP +    L   AR      P +S   LA++  H WPG
Sbjct: 298 DLYYRLKVVTLWLPPLRERREDIPPLARFFLSRFAREMDTPDPGISTEALAYMEAHPWPG 357

Query: 354 NVHELGRLAERL-------------------------------------ALGLEQEPVAD 376
           NV ELG   ++                                       L L +  ++ 
Sbjct: 358 NVRELGNAIQKALVFNRGAPLLPEDIRQALEGVRGSTSTREGDEGAGDDLLQLVRRTLSG 417

Query: 377 GATLPLDARMDAFERMAIIEAIQATGGDMGQAIERLGLPRKTFYYRVRRLGIDLRK 432
           G     +  MD   R+ + EA+Q TGG+  +A   LG+ R T   R+ R G+ + +
Sbjct: 418 GDDNAFETIMDHVGRIVVREALQYTGGNRTRAARLLGMSRPTLLARMERYGLKVEQ 473