Pairwise Alignments

Query, 703 a.a., Zinc-regulated outer membrane receptor from Sphingobium sp. HT1-2

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 66.2 bits (160), Expect = 5e-15
 Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 21/216 (9%)

Query: 6   LAGCALAVLGISTA--AHAQTASDDAADGYHQATRSDIIVTGILPTRRQDMLSSVAVVEG 63
           L+  + AVL +  A  AHA+T        Y +     ++    +     ++  SVAV+EG
Sbjct: 3   LSPVSAAVLSVLAAGFAHAETEPSH----YEEV----VVTANRIEQPLSEVAGSVAVLEG 54

Query: 64  KDLTQAIRPSIGETLERQPGVSATSFGPSASRPVLRGLQGERVKMLNNSLSTVD-VSNTS 122
           + L +  +  + + L ++PGVS T          +RG+ G R+ ++ + + + D      
Sbjct: 55  ETLEKQGKTELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAAD 114

Query: 123 VDHAVVVNPLL---AERIEVLRGPQSLLYGSSAIGGVVNVIDKRIPNAIPDEPVHVDAIG 179
           ++     N       ++I+V++G  S LYGS AIGGVV +  K   + +     +VDA  
Sbjct: 115 INDKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAAL 174

Query: 180 TYGSAADERSGAASVDVPLSGGWVAHADGSYLKSDD 215
           TY   ++   G  ++        + H DG  L + D
Sbjct: 175 TYSGISNRYQGNHALA-------MRHGDGEALLTID 203



 Score = 39.7 bits (91), Expect = 5e-07
 Identities = 70/318 (22%), Positives = 117/318 (36%), Gaps = 34/318 (10%)

Query: 395 EEAFLPKNSTTQVGVFTLQQLDYGALKFELGGRYEHTSLTANPLEDQEQFFAGKRSFDAF 454
           +E F P     + GV+    L  G      G R++   L+    +    +         +
Sbjct: 393 DEPFAPAREY-RFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSEW 451

Query: 455 SGSVGASYGLTDSWRIGLNLSHTERAPAAEELFANGPHAG---TQAYEVGNPDFNLEKAN 511
           S S   SY     W   L+ +H  RAP+ ++ +    H+    T      N     E ++
Sbjct: 452 SPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSD 511

Query: 512 SVEAILRGSGDNYSFEASAYHTWFSNFI------YEDLTGEEEDGLPVYAFNQADARYYG 565
           S E   +       F  + +++ F NFI      Y++ TG     +  Y  N A  + YG
Sbjct: 512 SFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSV---IQQYQ-NIAGVKTYG 567

Query: 566 FEVQGSLTLAKLGDGKIVADGLADYVHANVKSVGPAPRIPPLRLLGGLAYQATKFDLRGE 625
            E+     + +L D   V + L  YV            + PL     L YQ  ++D    
Sbjct: 568 AEMS---VMHRLDDRWSVENKLG-YVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSR 623

Query: 626 VERVSKQDRVAEFET---------TTPGYTMVNAELNVRPWGKERPLSFALSANNIFDVV 676
           +   S   RV    T         TT G+   +  LN + W  +   SF     N+ +++
Sbjct: 624 LNWASAMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQ-WNAQLSASF-----NVVNLL 677

Query: 677 ARRASSFLKDYAPLTGRD 694
            R  + + +D A +T  D
Sbjct: 678 DREYTRY-QDVAGVTPSD 694