Pairwise Alignments

Query, 401 a.a., ABC-type antimicrobial peptide transport system, permease component from Sphingobium sp. HT1-2

Subject, 404 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  120 bits (300), Expect = 9e-32
 Identities = 110/409 (26%), Positives = 185/409 (45%), Gaps = 35/409 (8%)

Query: 9   AFRAINRHKMRSFLTTLGIIIGVAAVVTMVTLGNGATAAVREQISSLGANVLQLRPGQGF 68
           +++ +  H+++S L    I  GV +VV ++ LG G   A  E    L      +  GQ  
Sbjct: 8   SWQTLLAHRLKSVLAITAISWGVISVVILMALGEGFYRAQTESFRFLLQETQMVASGQTS 67

Query: 69  GRGGGGP--RPPNFKEADLTAIENQ-------LTGVRAVAPVVQSSGTAIYEGNNWSTTV 119
               G P  RP    E+ +  +  +       +        + Q  GTAI       + V
Sbjct: 68  EVWQGMPARRPIQLTESLMREVAQRPEIQRYSIVYENREVSITQQRGTAI------GSMV 121

Query: 120 YGTTSAYSQVQSWNVSEG-RLFMPDEEEAGKSVCIIGNTVRTNLFQGNDPIGKRMRIKGV 178
            G    Y  +    ++ G R F   ++   + V I+G+ V          IG   +I+G+
Sbjct: 122 SGVDRGYFSLAGLKLTLGSRDFSLHDQHNHRRVAILGDHVAAT---SQLKIGDEFKIRGI 178

Query: 179 SCQVVGVLATRGQG-GFGDQDDVVVMPIKFVQRRFTGDRDISQIMVAVDDAYDSATVQDS 237
           + +V+G++        FGD   V +    F   +   D   + ++V       S  +++ 
Sbjct: 179 AFRVIGIMDDESSRFSFGDNQKVFIPSSTF---KDIWDTQPNMMLVLPAQGVSSWALREQ 235

Query: 238 LEQLMRERRKIKAGAEDNFNVFDTKQISDTLTGTTTILTQIVAAVAA---ISLLVGGIGI 294
           L     +R  +    ED   VF        +   T IL  I A +AA   +++ VG +G+
Sbjct: 236 LRHTFAQR--LHFSPEDQEAVF-LPDFGSGVAVITAILRGIQAFLAASGMMTMAVGILGV 292

Query: 295 MNIMLVSVTERTREIGIRLAIGAVAREVLMQFLVEAIVLSCMGGLIGLVIA-----LIAS 349
            N+M ++VTERTREIG+RLAIGA  + +  QFL+E ++L  +G L+GL++A     L+  
Sbjct: 293 ANMMFLAVTERTREIGVRLAIGATPQRIQQQFLLEGLLLVVIGALVGLLLAYFGVLLLNH 352

Query: 350 VGIAPLMKVPFTFDPQVNLIAFLFSAAIGVVFGYFPARRAASLNPIDAL 398
           +G+   +  P      V  ++ L ++ + +   YFPARRAA L P+ AL
Sbjct: 353 LGLPTWLGEPVITSTTV-WLSMLVTSILALAAAYFPARRAAQLEPVIAL 400