Pairwise Alignments

Query, 401 a.a., ABC-type antimicrobial peptide transport system, permease component from Sphingobium sp. HT1-2

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score =  192 bits (487), Expect = 2e-53
 Identities = 128/412 (31%), Positives = 220/412 (53%), Gaps = 37/412 (8%)

Query: 6   VILAFRAINRHKMRSFLTTLGIIIGVAAVVTMVTLGNGATAAVREQISSLGANVLQLRPG 65
           V  A R I + K +S LT +GI+IG+ A+V++++LG G    + E+IS  GA+V+ + P 
Sbjct: 7   VSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVYPS 66

Query: 66  QGFGRGGGGPRPPNFKEADLTAIENQLTGVRAVAPVVQS--SGTAI-YEGNNWSTTVYGT 122
           Q            NF + DL A+E+    VR V  V+     GT + Y    + ++V+ T
Sbjct: 67  QQITSIA---MSKNFNDRDLKAVED----VRGVDVVLYGWFGGTQVTYHDQEYYSSVFAT 119

Query: 123 TSA-----YSQVQSWNVSEGRLFMPDEEEAGKSVCIIGNTVRTNLFQGNDPIGKRMRIKG 177
            S+     +++   + + +GR +M D +   K  C+IG ++  + F     IG ++ I  
Sbjct: 120 KSSTYQIFFTEAYGYELEKGR-WMKDSD---KYTCVIGYSLAHDTFDREIDIGDKIEIND 175

Query: 178 VSCQVVGVLATRGQGGFGDQDDVVVMPIKFVQRRFTGDRDISQIMVAVDDAYDSATVQDS 237
              +VVG+L    Q G  D D+ +V+P +     F  D + +  MV + D  D   V + 
Sbjct: 176 KKYKVVGILE---QIGNPDDDNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVSED 232

Query: 238 LEQLMRERRKIKAGAEDNFNVFDTKQISDTLTGTTTILTQIVAAVAAISLLVGGIGIMNI 297
           +E  + + R      ++NF+V   +Q++++++   ++LT  +  VA ISLLVG +GI N 
Sbjct: 233 IEDELEDSR-----GDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNT 287

Query: 298 MLVSVTERTREIGIRLAIGAVAREVLMQFLVEAIVLSCMGGLIGLVIAL--------IAS 349
           M +S+ ER ++IGI  A+GA    +L  F+VEA  L   GG++G ++ +        +A+
Sbjct: 288 MHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAA 347

Query: 350 VGIAPLMKVPFTFDPQVNLIAFLFSAAIGVVFGYFPARRAASLNPIDALRHE 401
           +    L++   +++  V ++ F F   +G++ GYFPAR  A LNP+D LR E
Sbjct: 348 ISGYGLIRAWISWELIVGVLVFSF--VVGILSGYFPARSGAKLNPVDTLRGE 397