Pairwise Alignments

Query, 495 a.a., Replicative DNA helicase (DnaB) (EC 3.6.4.12) from Sphingobium sp. HT1-2

Subject, 468 a.a., replicative DNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  274 bits (700), Expect = 6e-78
 Identities = 174/474 (36%), Positives = 263/474 (55%), Gaps = 44/474 (9%)

Query: 19  PRNVEAEAALLGALMIDNRIAEDVQLKLKPEHFFEPLHGRIYEAVMRLIERDMIANPVTL 78
           P ++EAE +++G L++DN   + V   +  + F+   H  I++ V  ++E     + +TL
Sbjct: 25  PHSLEAEQSVIGGLLLDNERWDTVSEHVMTQDFYSRPHRLIFDGVKSILEAGKPLDLITL 84

Query: 79  KPMLEQDPALKELGGAAYLAQLTGSGAALLGARDFATQIYDLALLRQLVNVGRELVDNAL 138
              LEQ   L+++GG AYLA L  +  +      +A  + + AL+R L+ V  E+ D   
Sbjct: 85  SEYLEQREQLEDVGGFAYLADLAKNTPSAANINAYAEIVAERALVRNLIGVANEIADAGY 144

Query: 139 DTSEDVNPREQIELAE-----VALYKVSEGEGESGSVKSFLSASTMAVQVAERALNSGGH 193
           D  +  N  + ++LAE     +A  + SE EG   +V S L  +   +++  +    G  
Sbjct: 145 DP-QGRNAEDLLDLAESKVFAIAEARTSENEGPK-NVDSILERTLERIELLYKTPQDG-- 200

Query: 194 VSGITTGINSLNEKIGGLHNSDLMILAGRPGMGKTSLATNIAYNAASRWLRDHSDGIPPE 253
           V+G+ TG   LN+K  GL  SDL+I+A RP MGKT+ A N+  NAA              
Sbjct: 201 VTGVNTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAME------------ 248

Query: 254 KNMGAKTAFFSLEMSADQLATRVLAEQSGISGEALRMGKISRADFQNLSRAARDLQELP- 312
                    FSLEM A+Q+  R+LA  S +    +R G++   D+  +S     L E   
Sbjct: 249 --QDKPVLIFSLEMPAEQIMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKN 306

Query: 313 LFIDDTPGLTIAALRTRARRLKRRHD-VGFIVVDYLQLLQGSGKAGDSRVNEISEISRGL 371
           ++IDD+ GLT   +R+RARR+ R H  +  I+VDYLQL++      D+R  EI+EISR L
Sbjct: 307 MYIDDSSGLTPTEVRSRARRIAREHGGLSLIMVDYLQLMRVPALT-DNRTLEIAEISRSL 365

Query: 372 KTLAKELHVPVLALSQLSRAVEQREDKRPQLSDLRESGSIEQDADMVWFVFREDYYVAAK 431
           K LAKEL+VPV+ALSQL+R++EQR DKRP  SDLRESGSIEQDAD++ F++R++ Y    
Sbjct: 366 KALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVY---- 421

Query: 432 EPGNKEGPEHQEWVQEMERIYGLAEVIVAKQRHGSTGRIRMKFDAKITRFSDLA 485
              + + P           + G AE+I+ KQR+G  G +R+ F    +RF + A
Sbjct: 422 ---HPDSP-----------LKGTAEIIIGKQRNGPIGSVRLTFQGHYSRFDNYA 461