Pairwise Alignments

Query, 699 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Sphingobium sp. HT1-2

Subject, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (358), Expect = 5e-38
 Identities = 140/560 (25%), Positives = 236/560 (42%), Gaps = 80/560 (14%)

Query: 38  LVGRMGWISIAENEKYQLLSESNRVNLTLIPPRRGWIVDRNGRPLANNRTDFRVDLIPQR 97
           LV R+ +I I E +      +   +    +   RG I DRNG  LA +     V   P  
Sbjct: 44  LVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEAVWADPVA 103

Query: 98  IVDAEATVGH-----LAQLLSLQPDDV-DRIKEELDKSAGFRPVQVADKLTYDQFAAVSV 151
           I      V       LA +L L   ++  +I++   +   +   QV+  +      A  +
Sbjct: 104 IYKEGGLVEKDRWYALADVLGLDRQEMMKKIEDNRSRRFIYLQRQVSPAM------AKYI 157

Query: 152 RLTDLPGVAPSQGFSRHYPAGATVGHLLGYVGAATAEDYKKRKDPLLITPGFKVGKDGLE 211
           R   L G+   +   R+YPAG    HL+G  G                      G +G+E
Sbjct: 158 RELKLAGIGLKEESRRYYPAGEVSAHLVGVTGIDGH------------------GLEGVE 199

Query: 212 RAYDEHLTGKPGAKRVEVTARGKIVRELTTRPDTPGNPIKLTIDAGLQEYAGRRL----- 266
           R++D  LTG+ G         G++V  +       G PI+LTID  LQ  A R +     
Sbjct: 200 RSFDSTLTGESGKSVTRKDKFGRVVENIALEEREEGKPIQLTIDQRLQAIAFRAVKQAMA 259

Query: 267 --ATQSGAVVVIDCHNGDVLACASMPSFDPNSFSDGISHLEWEMLSKDDHVPLRNKVLQG 324
                S + V++D   G VLA  + PS++PN+ +D      W+         +RN+V+  
Sbjct: 260 DYRATSASAVMLDVKTGAVLAMVNAPSYNPNNRND------WQSFK------MRNRVITD 307

Query: 325 LYPPGSTVKPMVALALLEAGVSPAETV--SCGGAIRVGNTLFHCHKKRGHGPLNMRGAIA 382
            + PGSTVKP V LA L  G++   T+  +  G +++G +      K G   L +   + 
Sbjct: 308 AFEPGSTVKPFVVLAALANGIADKNTIIDTGDGTMQIGGSRVRDTSKVGKADLTL--ILK 365

Query: 383 QSCDIYFYQMAQRIGMDRIASMARRVGMGQRFDLPFPSQSYGTVPDPTWKLKKYNQKWQV 442
           +S +I   ++A  + ++ +  M   VG+G+   L    ++ G  P+         ++W  
Sbjct: 366 KSSNIGVAKLALEMPLEALLGMYSSVGLGEMSGLDLVGETIGIFPN--------RRRWSQ 417

Query: 443 YDTVNATIGQGYMLINPLQMAVMAARLATGRQLMP-NFLHGAARPEPALVGVPEEHLVTI 501
           ++    + G G + I P+Q+A   A L    +  P + + G    E   V V  +++  +
Sbjct: 418 FEIATLSFGYG-LAITPIQLAHAYATLGNHGKYQPIHIIKGDQHGETRQV-VDPKYVNQV 475

Query: 502 RDAMSAVVNGGGTGGAARMSIPDVLIAGKTGTAQVRRITMAERAGGVRGNAGLPFKLRDH 561
            + +  V   GGT  A R ++P   IA K+GT++         AGG        +     
Sbjct: 476 LEMLETVTQPGGT--ATRAAVPGYRIAAKSGTSR------KAIAGG--------YSDEYF 519

Query: 562 ALFQGFAPFDNPRYAIACII 581
           A   G AP  +PR ++  ++
Sbjct: 520 AYTAGVAPVSDPRISLVVMV 539