Pairwise Alignments

Query, 699 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Sphingobium sp. HT1-2

Subject, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

 Score =  303 bits (775), Expect = 2e-86
 Identities = 205/611 (33%), Positives = 318/611 (52%), Gaps = 43/611 (7%)

Query: 16  QSFTFSRRAMV-VGGLQGAIGALLVGRMGWISIAENEKYQLLSESNRVNLTLIPPRRGWI 74
           ++  F  RA+V   G+   +G LLV  +  I I + + Y+  S  NR+ +  I P RG I
Sbjct: 14  ETHLFRNRAIVSFVGILICMG-LLVTNLYNIQINQYQDYKTRSNDNRIKVVPIAPNRGLI 72

Query: 75  VDRNGRPLANNRTDFRVDLIPQRIVDAEATVGHLAQLLSLQPDDVDRIKEELDKSAGFRP 134
            DRNG  LA NR  F +++IP+++ + E T+  L QL+ + P+ +   ++E  ++  F  
Sbjct: 73  FDRNGVLLAENRPVFNLEVIPEKVPNMEETIARLQQLIEISPEKLAAFEKERKQTRRFNS 132

Query: 135 VQVADKLTYDQFAAVSVRLTDLPGVAPSQGFSRHYPAGATVGHLLGYVGAATAEDYKKRK 194
           V +  +LT D+ A  SV     PGV+ +    R+YP G  + H++GYV     +D ++  
Sbjct: 133 VPLLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSRINDKDLER-- 190

Query: 195 DPLLITPGFK--------VGKDGLERAYDEHLTGKPGAKRVEVTARGKIVRELTTRPDTP 246
              L   G K        +GK G+ER Y++ L G  G + VEV +RG+++R L   P  P
Sbjct: 191 ---LDKEGKKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKYVPPIP 247

Query: 247 GNPIKLTIDAGLQEYAGRRLATQSGAVVVIDCHNGDVLACASMPSFDPNSFSDGISHLEW 306
           G  I L +D  LQ YA + L  + G++V +D  +  VLA AS PS+DPN+F  GIS   +
Sbjct: 248 GKDIVLNLDIELQLYAYKLLEGRRGSIVALDPKDNGVLAMASSPSYDPNAFVHGISGKAY 307

Query: 307 EMLSKDDHVPLRNKVLQGLYPPGSTVKPMVALALLEAG-VSPAETVSCGGAIRVGNT--- 362
             L  D   PL N+   G+YPPGSTVKP +A++ L+ G ++P  T +  G  R+ NT   
Sbjct: 308 SDLLNDKRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTTRNDPGYWRIPNTDTR 367

Query: 363 LFHCHKKRGHGPLNMRGAIAQSCDIYFYQMAQRIGMDRIASMARRVGMGQRFDLPFPSQS 422
            F    + GHG +++  ++ +S D +FYQ+A  +G+D+++S   R G G    +    +S
Sbjct: 368 PFRDWLRWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDLTGIDIYEES 427

Query: 423 YGTVPDPTWKLKKYNQKWQVYDTVNATIGQGYMLINPLQMAVMAARLAT-GRQLMPNFLH 481
              +P   WK+ ++   W   DT+   IGQGY    P+Q+A   + L   G+ + P+ L 
Sbjct: 428 KANMPTREWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNHGKVIAPHLLR 487

Query: 482 GAA--------------RPEPALVGVPEEHLVTIRDAMSAVVNGG-GTGGAARMSIPDVL 526
                               P + GVP+++       M  V +G  GT   A  ++P   
Sbjct: 488 ATIDNGEQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKGTARRAFQNMP-YE 546

Query: 527 IAGKTGTAQVRRITMAERAGGVRGNAG-LPFKLRDHALFQGFAPFDNPRYAIACIIEHGG 585
            AGK+GTAQV  +     A G + NA  L   L DHALF GFAP  +P+  +  ++E+GG
Sbjct: 547 SAGKSGTAQVFGL-----AEGQKYNASELAEHLHDHALFTGFAPVKDPKVIVTFVLENGG 601

Query: 586 HTIRNEDAPMI 596
               N  AP++
Sbjct: 602 GGSSN-GAPVV 611