Pairwise Alignments

Query, 860 a.a., DNA topoisomerase I (EC 5.99.1.2) from Sphingobium sp. HT1-2

Subject, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

 Score =  120 bits (302), Expect = 2e-31
 Identities = 137/540 (25%), Positives = 240/540 (44%), Gaps = 55/540 (10%)

Query: 60  KQLKAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQTVDRVTFNAITKAAV 119
           +QL  +    K+AT++I A DPDREG+ +   V +  +  K+  +TV R+  + +  +AV
Sbjct: 84  QQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAV 143

Query: 120 LDAMAKPRALDE--DLIDAYRARRALDYLVGFTLS---PVLWRKL--PGAKSAGRVQSVA 172
             A+   R+  E   L  +  AR   D+L G  +S    +L +K    G  S GRVQ+  
Sbjct: 144 KRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPV 203

Query: 173 LRLVVEREREIESFVPQEYWSISAEME-QGGQGFTARLVRWK--------GEKIDRLTIG 223
           L LVV R+ EIE F+P +Y+++ A +  Q G  +     RWK         ++  R+T  
Sbjct: 204 LGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNR 263

Query: 224 KEGDAMAAKADVEAGRFTVDKVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQ 283
           K  D +A++   +    TV + E     +  P P++ S LQ +AA++  FSA   + + Q
Sbjct: 264 KLVDNVASRIANQPA--TVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQ 321

Query: 284 QLYE-DGAITYMRTDGVQMDGSAISAARKAIAERYDGGY-----LPEKPRQYQTKAKNAQ 337
            LYE    ITY R+D   +    ++ A   +A   +        + +     ++KA N  
Sbjct: 322 SLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDS 381

Query: 338 --EAHEAIRPTEFHRD-KVGGGDHARLYDLIFKRALASQMASARLERTTIDMVDGSGSHT 394
             +AH AI PT          G   ++Y LI ++ L     +A        +V       
Sbjct: 382 KVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYPAAIYAEA--KLVFNIAGGI 439

Query: 395 LRATGQVVIFPGFLALYEEGRDDAEDDDSKLLPRLSEGDAPAKKKVSAEQHFTQPPPRYS 454
             A G+ ++  G+  L   G+ D +++    +P L  G     ++   +Q  T+PP  ++
Sbjct: 440 FIAKGRQLLSAGWKVL--TGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFT 497

Query: 455 EASLV------------KKLEEL-----GIGRPSTYASTLQVLKDRDYVRVEKNRFFAEE 497
           EA+L+            K+L+++     G+G  +T A  L  L  R  ++ +     +  
Sbjct: 498 EATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTP 557

Query: 498 SGRLVTAFLERFFERYVSYDFTAGLEDELDEISGGRAQWQEVLEAFWKDFKPKTAEIMEQ 557
           +GR     +          D TA  E +L  I    A+  +  + F +  + +  +++EQ
Sbjct: 558 AGR---GLIHALPSEATYPDMTAHWEHQLQAI----AEKGQAYQPFMQTLQGRLEQLIEQ 610