Pairwise Alignments

Query, 860 a.a., DNA topoisomerase I (EC 5.99.1.2) from Sphingobium sp. HT1-2

Subject, 635 a.a., DNA topoisomerase 3 from Enterobacter sp. TBS_079

 Score =  119 bits (299), Expect = 4e-31
 Identities = 139/521 (26%), Positives = 228/521 (43%), Gaps = 49/521 (9%)

Query: 60  KQLKAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQTVDRVTFNAITKAAV 119
           KQL  I      AT +I A DPDREG+ +   V + L       Q V R   N +   AV
Sbjct: 83  KQLNVIKRFLHDATEVIHAGDPDREGQLLVDEVLDYLELAPEKRQQVQRCLINDLNPQAV 142

Query: 120 LDAMAKPRALDE--DLIDAYRARRALDYLVGFTLS---PVLWRK--LPGAKSAGRVQSVA 172
             A+++ RA  E   L  +  AR   D+L G  ++    +L R     G  S GRVQ+  
Sbjct: 143 ERAISRLRANSEFIPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPV 202

Query: 173 LRLVVEREREIESFVPQEYWSISAE-MEQGGQGFTARLVRWKGEKIDRLTIGKEGDAM-A 230
           L LVV R+ EIE+FV ++++ + A  +    + FTA    W+          +EG  +  
Sbjct: 203 LGLVVRRDEEIENFVAKDFFEVKAHIVTPKDERFTA---VWQPSDACESYQDEEGRLLHR 259

Query: 231 AKADVEAGRFT-----VDKVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQL 285
             A+    R T     V     K  +   P PF+ S LQ EAA++ G SA + + I Q+L
Sbjct: 260 PLAEHVVNRITGQPAIVTSYNDKRESEPAPLPFSLSALQIEAAKRFGLSAQNVLDICQKL 319

Query: 286 YE-DGAITYMRTDGVQMDGSAIS---AARKAIAERYDGGYLPEKPRQYQTKAK----NAQ 337
           YE    ITY R+D   +     +   +   AIA  +    LP+         +       
Sbjct: 320 YETHKLITYPRSDSRYLPEEHFAGRHSVMNAIAV-HAPDLLPQPVVNPDIHNRCWDDKKV 378

Query: 338 EAHEAIRPTEFHRDKVGGGDHARLYDLIFKRALASQMASARLERTTIDMVDGSGSHTLRA 397
           +AH AI PT    +     + A++Y+L+ ++ L      A   +  I++    G    +A
Sbjct: 379 DAHHAIIPTARASNVNLTENEAKVYNLVARQYLMQFCPDAVFRKCVIELEIAKGKFIAKA 438

Query: 398 TGQVVIFPGFLALYEEGRDDAEDDDSKLLPRLSEGDAPAKKKVSAEQHFTQPPPRYSEAS 457
             + +   G+  L      D E++D   LP +++ D    +K    +  TQPP  +++A+
Sbjct: 439 --RFLAEAGWRTLLGNKERD-EENDGTPLPVVAKDDELLCEKGEVVERQTQPPRHFTDAT 495

Query: 458 LV------------KKLEEL-----GIGRPSTYASTLQVLKDRDYVRVEKNRFFAEESGR 500
           L+            K L+++     G+G  +T A  +++L  R ++  +     + E GR
Sbjct: 496 LLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLEKKGRYIHSTEPGR 555

Query: 501 LVTAFLERFFERYVSYDFTAGLEDELDEISGGRAQWQEVLE 541
              A +    E     D TA  E  L +IS  + ++Q+ ++
Sbjct: 556 ---ALIHSLPELAARPDMTAHWESVLTQISEKQCRYQDFMQ 593