Pairwise Alignments

Query, 160 a.a., RNA-binding protein Hfq / RNA-binding protein Hfq from Sphingobium sp. HT1-2

Subject, 87 a.a., RNA-binding protein Hfq from Vibrio cholerae E7946 ATCC 55056

 Score = 71.6 bits (174), Expect = 3e-18
 Identities = 36/65 (55%), Positives = 51/65 (78%), Gaps = 1/65 (1%)

Query: 4  KVNNLQDIFLNSLRKSKTPVTMFLVKGVKLQGIITWFDNFSVLLRRDGQSQLVYKHAIST 63
          K  +LQD FLN+LR+ + PV+++LV G+KLQG I  FD F +LL ++  +Q+VYKHAIST
Sbjct: 3  KGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILL-KNTVNQMVYKHAIST 61

Query: 64 VMPAQ 68
          V+PA+
Sbjct: 62 VVPAR 66



 Score = 64.7 bits (156), Expect = 4e-16
 Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)

Query: 84  KPRLLQEIFLSAVRKSGSPVTMFLVNGVMLQGEIAAFDLFCMLLERDGMVQLVYKHAIST 143
           K + LQ+ FL+A+R+   PV+++LVNG+ LQG+I +FD F +LL ++ + Q+VYKHAIST
Sbjct: 3   KGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILL-KNTVNQMVYKHAIST 61

Query: 144 VQP 146
           V P
Sbjct: 62  VVP 64