Pairwise Alignments

Query, 400 a.a., Phage integrase from Sphingobium sp. HT1-2

Subject, 409 a.a., phage integrase family protein (RefSeq) from Shewanella loihica PV-4

 Score =  219 bits (558), Expect = 1e-61
 Identities = 132/391 (33%), Positives = 203/391 (51%), Gaps = 5/391 (1%)

Query: 3   LSALALSKAKPREKPYKLADGHGLYLLVTPQGGRYWRMNYRFDGKAKTMAMGV--FPLIT 60
           L+   +   KP  K   L+DG GL L V   G + W  NY      K + +G+  +P I 
Sbjct: 8   LTNTQIKNQKPGPKDIVLSDGGGLQLRVRTNGSKLWNYNYYHPVTKKRVNIGIGPYPDIP 67

Query: 61  LAEAREKREDARKLLAAGSDPCAKRKEIEAQEAFEATTGFRIVAEEWLAKREREGLGDIT 120
           LA+ARE   + R+L+A G DP +KR++   +   E     + VA EWL  ++ E      
Sbjct: 68  LAKAREIALEYRQLVACGVDPKSKREQESLKLKQEVLYTLKNVAAEWLEIKKSEVTKSHA 127

Query: 121 IGKIKWLLEFAYPSLGDRKIGEITSMELLAVLRQVEGRGRHETARRLRSVCGRVFRYAIA 180
                 L    +P LGD  + +IT+  ++ V R +E +G  ET +RL      +  + + 
Sbjct: 128 AKTWSSLESHVFPELGDTPLNKITAPLVIKVFRPIEAKGSLETIKRLSQRLNEIMNFGVN 187

Query: 181 TGRAEHDLSANLRDALTTPKVKHLAAITSSQQVGPLLRAIDGFDGHAVTKAALRLAPHVF 240
            G  + +    +R A   PK + +A +T S+ +  L+R +       VT+  +    H  
Sbjct: 188 CGYIDSNPLVGIRAAFKKPKKESMATLTPSE-LPLLMRHLSQASIKRVTRCLIEWQLHTM 246

Query: 241 VRPGELRHAEWPEIDFEKALWSIPAEKMKMRRPHRVPLSRQSLTILSSIREVTGAGKFVF 300
            RP E   A W E+D +   W+IPAEKMK RR H +PL++Q L IL +I+ ++G   ++F
Sbjct: 247 TRPSEAATARWDELDLDNLTWTIPAEKMKRRREHVIPLTQQMLGILDAIKPISGHRDYIF 306

Query: 301 PGFQSLKRPMSENALNGALRRLGYSGDEMTSHGFRAMASTLLNEMGKWHPDAIERQLAHA 360
           P  +  K   +    N AL+R+G  G ++ SHG RA+AST LNE G +  D IE  L+H 
Sbjct: 307 PADRDPKSHCNTQTANVALKRMGLKG-KLVSHGMRALASTTLNEQG-FESDLIEAALSHV 364

Query: 361 EADAVRRAYARGEYWEERVVMMQAWSDYLDE 391
           +A+ VR AY R ++ E R  MM  WS +++E
Sbjct: 365 DANQVRAAYNRSDFLERRRPMMSWWSKHIEE 395