Pairwise Alignments

Query, 340 a.a., Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) from Sphingobium sp. HT1-2

Subject, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

 Score =  395 bits (1015), Expect = e-115
 Identities = 200/330 (60%), Positives = 251/330 (76%), Gaps = 4/330 (1%)

Query: 3   EEDRLITPA----RRAEDVDAALRPKSLDEFVGQQAARENLRIFIQAARTRGEALDHVLF 58
           E DRLI P     +  E +D A+RPK L ++ GQ   R+ + IFIQAA+ R EALDH+L 
Sbjct: 3   EADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLI 62

Query: 59  FGPPGLGKTTLAQIVAKEMGVGFRATSGPVIAKSGDLAALLTNLDEGDVLFVDEIHRLNP 118
           FGPPGLGKTTLA IVA EMGV  R TSGPV+ K+GDLAALLTNL+E DVLF+DEIHRL+P
Sbjct: 63  FGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSP 122

Query: 119 AVEEVLYPAMEDRALDLMIGEGPSARSVRIDLPRFTLVGATTRQGLLTTPLRDRFGIPVR 178
            VEEVLYPAMED  LD+MIGEGP+ARS++IDLP FTL+GATTR G LT+PLRDRFGI  R
Sbjct: 123 MVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQR 182

Query: 179 LQFYTVDELELVVRRAARLLDLAITSDGAIEIARRSRGTPRIAGRLLRRVRDFANVAGAP 238
           L++Y V +L+ +V+R+A+ L L++ S+GA+E+ARR+RGTPRIA RLLRRVRD+A V G  
Sbjct: 183 LEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDG 242

Query: 239 TVDAKVADAALQRLEVDHLGLDLMDRRYLHMIADIYRGGPVGVETLAAGLSEARDTIEEV 298
            + A+ AD AL  L+VDH G D MDR+ L  I + + GGPVG++ LAA + E +DTIE+V
Sbjct: 243 HICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDV 302

Query: 299 VEPYLIQLGLIARTARGRCLNGPGWKHLGL 328
           +EP+LIQ G + RT RGR      + H G+
Sbjct: 303 LEPFLIQQGYLQRTPRGRIATDRAYLHFGI 332