Pairwise Alignments

Query, 1147 a.a., Chromosome partition protein smc from Sphingobium sp. HT1-2

Subject, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

 Score =  169 bits (427), Expect = 2e-45
 Identities = 248/1245 (19%), Positives = 509/1245 (40%), Gaps = 169/1245 (13%)

Query: 3    IKRLKLSGFKSFVDATELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGGGME 62
            +  + +  FKSF ++ +L+I  G T I+GPNG GKSN ++ I +V+G++SAKS+R G   
Sbjct: 4    LSEIHMKNFKSFKNS-KLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFN 62

Query: 63   DVIFAGTTSRPQRDFAEVSLLTIQEQGELFNAVDVGADGELEVTRRIERGAGSAY----- 117
             +I      R   +FAEV+L+   +  ++     V +D ++ ++R+++    + Y     
Sbjct: 63   QLITYHNGKR--ENFAEVTLIFDNKDRKM----PVDSD-KVGISRKVKINGDNNYYLIWN 115

Query: 118  -----RANG----------KDVRAKDVALIFADAATGAHSPALVSQGRIAAVIAARPQER 162
                 + NG          K V+  ++  +    +  A    ++ QG +  +I   P ER
Sbjct: 116  EEKEVKENGEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNER 175

Query: 163  RAMLEEAAGIAGLHVRRKDAEQKLRAAEGNLARLDEILADMDSRAGNLRRQARAAERYIR 222
            R +++E +G+A    + + A+++L  A   + ++D  + ++ +    L+++   AE +++
Sbjct: 176  RKIIDEISGVAEFDEKGEKAKKELEKAREFIEKIDIRINEVKNNLEKLKKEKEDAETHVK 235

Query: 223  LSEQIRIAEGRVIFARWREANASAEAARAEAKLAEATVGAAQEALTAANAHSG------- 275
            L+E+++  +  +   +    N   E  + E +  +       + ++  +A S        
Sbjct: 236  LTEELKATKYILTSKKIEFLNGILEKTKEEIEALKEMKVCFLKEISEYDAKSNDIRNRLQ 295

Query: 276  AAVTALAER-RAEALATRDAASESGHQLNTLKAERDGVVRRLHDLAQQAAR----LDEDR 330
              +  L E+   E +    +  E    ++  K   +G +  L ++  Q+ +    L E R
Sbjct: 296  NLINELNEKGNEEIMELHKSIKEMEVTVDNDKKSLNGALDDLKNVNSQSEKKGQDLVETR 355

Query: 331  EREGTLANDAAEAIARLTA----------EVASLKGRIAETEAMRPDFAARIARAEDGAR 380
            ++  T+  +  +  A + A          E   LK ++ E+E        +  +  +   
Sbjct: 356  QKIETIRTETLQKEAEINALKTEMENLETEKKKLKSKVEESETQTEILKQQERKLSERIN 415

Query: 381  DAELDLAKAMAKQAGEQAELRVAEAALAAARDRLGRAEQAMRRLEGE------------- 427
            +++ +L     +    + E+      LA  ++ +   ++ +  +  E             
Sbjct: 416  ESQNELYNFKNEFNALENEINKKSFNLAKNKETIETLQKELEEIRSEHEDTKSLYKELED 475

Query: 428  ------------AAALPDAAPLEAKRDEAAAAQVRANADREAAEAAIATAETERQVASEA 475
                           L +    + + D++ A  ++ NA  +A +  +     +R V S  
Sbjct: 476  VAVELEYSKKKVVTLLENKKEYQDRLDKSHADYIKENAKIKAMK-DMEDFSLDRAVKSVL 534

Query: 476  RASAEAALASARAALAALDSEATALRKAIDASGSGR------------ARALDQLKAAPG 523
             A     +  A   L   D+E    + AI+ +G  R            ARA+  LK    
Sbjct: 535  EAKLPGVVDIA-GNLGKTDAE---YKTAIENAGGNRLNYIVVKRMDDGARAIQYLK---- 586

Query: 524  YERALAAALGDDLEAPIGAEGPRRWAGAEAL-KDDPGLPDGASPLTAHVTAPEALARRLA 582
                    LG     P+      R  G EAL  DD G+   A  L       E L R + 
Sbjct: 587  -----KNNLGRTTFLPLD-----RINGPEALYLDDEGVVGRAIDLVEFKPEHENLFRYVF 636

Query: 583  QVALVESDKGQALQVGQ----RLVTLDGQLRRWDGYVAVEGGAAAAERLIRIN------- 631
               ++  +   A  + +    R VTL+G++    G  A+ GG +  + +I+++       
Sbjct: 637  GNTIIVENLDYAKTLSKDHRARFVTLEGEVIEPSG--AMIGGRSRKKSVIKVDIDTSKLE 694

Query: 632  ----RLEAIDATRPAAAQAVDAAQAEQAEAGAREKAAVEALAAGR----------TKLGD 677
                 +  +D T       ++  Q + A    R+      L   +          T  G 
Sbjct: 695  KLAEDISELDGTLSETKDEIERLQNKNATYSTRKMELESRLKIIKDLEHKKEGILTNNGV 754

Query: 678  ADQRLRAALRAADEAAGALERLSGKREAIEERLAEARRDQGAVQAEHDKASAARAALPDG 737
              + L    R  +E    L+ L G +E +E ++ E  +      ++ D+ S   A+  + 
Sbjct: 755  KIKELELESRKLEE---ELDYLEGSKEELERKIEEFTKKISGFTSQRDRISEEIASF-EN 810

Query: 738  AETRAQVAALSQ---ASEKARMAV-SQLQADQALADRALSSDRERMAAADAEAKGWNTRA 793
            +E   ++  + +   A EK +    ++++ D  L    L     +++  ++  K  + + 
Sbjct: 811  SEHSKRIKVIDENIIAFEKKKNEFENEIKRDAVLIKEVLI---PKISELNSNIKELSEKR 867

Query: 794  GEAAKRIAAMASRGETVVQERAAIEGQPEALGTSIATLTEEREAQVERAEQARRAEIEAE 853
                + I    +  E   +     + + E L   +  LTE++EA             E E
Sbjct: 868  TILEQNIQFYKNNVEKNFEILKNKKERYEDLTKDLRELTEKKEA------------FEKE 915

Query: 854  ATLKAAEKRAADAGEALAGAREARATAVARAEAADERRIETNRL-SGERFECPPPVLPEK 912
              +   EKR    G       +  + ++ +A+       E  +L   E  E     +  K
Sbjct: 916  LEILNGEKRRV-YGRINQNESQINSLSIDKAKYETRLEEEDRKLYVCENIEQISEDITSK 974

Query: 913  LGFPSADIRTAQSEQAEHDRLSAERERIGPVNLVAAQELEELETIQATSRAESAELTQAI 972
            +     D+   +S Q +   L    +++ PVN+ A  + + +         +  +     
Sbjct: 975  I--KEFDVDALESHQID---LEGHIKKLEPVNMRAIDDYQYIVDRYDELFEKRTDYENEE 1029

Query: 973  NQLRGSIGSLNREGRQRLLAAFEAVDGHFRRLFTTLFNGGQAHLELIDSDDPLEAGLEIM 1032
             +    I  +++  ++  +  +  V  ++ +++T +  GG   L L + +DP   GL I 
Sbjct: 1030 KKYLHLIEEVSKRKKEVFMDVYLKVAENYEKIYTEI--GGSGKLSLENPEDPFSGGLLID 1087

Query: 1033 AQPPGKKLAALTLLSGGEQALTAVALIFGLFLTNPAPICVLDEVDAPLDDANVERFCDLL 1092
            A P  KKL +L ++SGGE++LTA+A +F +   NPAP  VLDEVDA LD  N     +++
Sbjct: 1088 ASPMNKKLQSLDVMSGGEKSLTALAFLFAIQHLNPAPFYVLDEVDAALDTKNAGLIGEMI 1147

Query: 1093 DAMVAQTRTRYLIVTHNAVSMARMHRLFGVTMVERGVSRLVSVNL 1137
                A   +++++++H    +++   ++GV M E G+S+LV + +
Sbjct: 1148 KN--ASKDSQFIVISHREQMISKSDVMYGVCM-ENGLSKLVGLKI 1189