Pairwise Alignments

Query, 1147 a.a., Chromosome partition protein smc from Sphingobium sp. HT1-2

Subject, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

 Score = 52.8 bits (125), Expect = 1e-10
 Identities = 51/234 (21%), Positives = 104/234 (44%), Gaps = 22/234 (9%)

Query: 1   MQIKRLKLSGFKSFVDATELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGGG 60
           M IK +K+  F+S  + T +    G+T I+G NG GKS++ +A+ + +      + R   
Sbjct: 1   MIIKNIKMENFRSHRN-TSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFR--- 56

Query: 61  MEDVIFAGTTSRPQRDFAEVSLLTIQEQGELFNAVDVGADGELEVTRRIERGAGSAYRAN 120
           +E+++  G  S       E+   T   + + F       D +L V  ++   + S     
Sbjct: 57  IENLMQQGAASFSVELEFEMMGNTYLVKRKRFQH---KTDDKLYVNGKLNAESASEINKK 113

Query: 121 GKDVRAKDVALIFADAATGAHSPALVSQGRIAAVIAARPQERRAMLEEAAGI-------A 173
            +++   D + +F++A         + QG IA +I   P++R+ ++ +  GI        
Sbjct: 114 IEEILEIDNS-VFSNA-------IYIKQGEIANLIQMTPRDRKEVIGKLLGIEKYEKASE 165

Query: 174 GLHVRRKDAEQKLRAAEGNLARLDEILADMDSRAGNLRRQARAAERYIRLSEQI 227
            +++ +K  E+ L   EG L +  EIL +++     +       E  ++  E +
Sbjct: 166 KMNIVKKSYEETLLKLEGELTQEPEILENLEKLKNEVSESEILKEEILKKYENL 219



 Score = 30.0 bits (66), Expect = 0.001
 Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 29/225 (12%)

Query: 889  ERRIETNRLSGERFECPPPVLPEKLGFPSADIRTAQSEQAEHDRLSAERERIGPVNLVAA 948
            E+ I+T   + E  E    +    L   +  +RT +   +E   L  + E I  +N    
Sbjct: 769  EKNIQTVNYNPELHENAKRLYENILNEFNDILRTLERISSE---LKLKNENISYLN---- 821

Query: 949  QELEELETIQATSRAESAELTQAINQLRGSIGSLNREGRQRLLAA--FEAVDGHFRRLFT 1006
            ++++ L   +   + +  E  + +++++  I S  ++G Q+ L       +  H  ++F 
Sbjct: 822  EKIQNLSN-KKEEKKKIEEFKEYLDKIKREIFS--KDGFQKYLREKYIPLIQRHTNQIFQ 878

Query: 1007 TLFNGGQAHLELIDSDDPLEAGLEIMAQPPGKKLAALTLLSGGEQALTAVALIFGL--FL 1064
              F    +H++L D    +  GL +              LSGGEQ   ++AL  G+   +
Sbjct: 879  E-FELPYSHIQLKDDYSLIVDGLPVET------------LSGGEQIAVSLALRLGISKAV 925

Query: 1065 TNPAPICVLDEVDAPLDDANVERFCDLLDAMVAQTRTRYLIVTHN 1109
             N     +LDE  A LD+   +   ++   +  +T  +  I+TH+
Sbjct: 926  CNNIECIILDEPTAYLDEDRRKNLLNIFKNI--KTINQMAIITHH 968



 Score = 29.3 bits (64), Expect = 0.002
 Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 24/197 (12%)

Query: 181 DAEQKLRAAEGNLARLDEILADMDSRAGNLRRQARAAERYIRLSEQIRIAEGRVIFARWR 240
           D E+KL+       +L   L D +     +  +    E+Y  LSE+I      V+     
Sbjct: 420 DLEKKLQNETDEKTKLISELTDFEKIEEKINLENELKEKYEDLSEKIDKLNEIVL----- 474

Query: 241 EANASAEAARAEAKLAEATVGAAQEALTAANAHSGAAVTALAERRAEALATRDAASESGH 300
                    + E+K++E     A+   T  + H     + + E + + L  +  +     
Sbjct: 475 ---------KKESKISEYKNSKAELEKTKDSCH--VCQSKITEEKKQELLEKYNSEIQNE 523

Query: 301 QLNT--LKAERDGVVRRLHDLAQQAARLDEDREREGTLAN------DAAEAIARLTAEVA 352
           QL+T  LK + + ++ +   +  +   +D  + + G L           E+I   T ++ 
Sbjct: 524 QLSTESLKKQLEIILNKKEKMKVKLNEIDSFKLKYGELKEKKNYSLKVEESIIETTEKLN 583

Query: 353 SLKGRIAETEAMRPDFA 369
            L G+I E  ++  + +
Sbjct: 584 ELTGKINEYSSLNDEIS 600