Pairwise Alignments

Query, 337 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

Subject, 317 a.a., Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1) from Variovorax sp. SCN45

 Score = 75.1 bits (183), Expect = 2e-18
 Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 28/284 (9%)

Query: 5   RTLTAALSVACLAAGLTAPQANAADREFALVFKVLNNAFSPPIQQGCEAAAK-KLGDVTC 63
           RTL +A ++  L A +  P       + ALV K L N F   ++ G +A  K      T 
Sbjct: 6   RTLQSAAALTLLGAIVATPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKANAAQYTL 65

Query: 64  TYLG-PTEYDEAKQVQLAQDMVTRGVAGLGVSAGNPKAMARIMKMAQDKGIPVVTFDTDV 122
              G   E D A Q+++ + MV + +  L ++  + KA+  ++K A DKGI VV  D  +
Sbjct: 66  VANGIKDETDTAAQIKMVEQMVAQKINALVIAPADSKALVPVIKTAIDKGILVVNIDNQL 125

Query: 123 ---LPEDAGLRSTYIGTDNYEFGIALAQKVLESKKDGGTVCIQSGAPASENLKARVQGIR 179
                ++ G++  ++G DN      +   + +  K G  V I  G   + N + R  G +
Sbjct: 126 DAAALKEKGIQVPFVGPDNRAGAKLVGDALAKELKSGDKVGIIEGVSTTFNAQQRTLGYQ 185

Query: 180 DTLAGVTKDKGAEKLTGQNG-WTEPAGCPVYNNDDITLAAQQVRDVMTNNPELSAFVAVG 238
           D +    K  G   +  Q+G W    G         T+AA  +R+    +P+L A +A  
Sbjct: 186 DAM----KAAGVTVVGVQSGQWEIDKG--------NTVAAGMLRE----HPDLKALLAGN 229

Query: 239 GWAQYAPQAYKQAMEPLKARLDSKDLVVVFGDNFGPQLPLLAEG 282
                       A+  +KA   +  ++VV  DN G   P+LA+G
Sbjct: 230 DSMALG------AVAAVKAAGKTGKVLVVGYDNIGAIKPMLADG 267