Pairwise Alignments

Query, 337 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

Subject, 295 a.a., ribose ABC transporter substrate-binding protein RbsB from Pectobacterium carotovorum WPP14

 Score = 70.5 bits (171), Expect = 5e-17
 Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 38/319 (11%)

Query: 1   MQPVRTLTAALSVACLAAGLTAPQANAADRE-FALVFKVLNNAFSPPIQQGCEAAAKKLG 59
           M+ + TL +A++++   +      ANA  ++  ALV   LNN F   +++G +  A KLG
Sbjct: 3   MKKLATLVSAVALSATVS------ANALAKDTVALVVSTLNNPFFVSMKEGAQKEADKLG 56

Query: 60  DVTCTYLGPTEYDEAKQVQLAQDMVTRGVAGLGVSAGNPKAMARIMKMAQDKGIPVVTFD 119
                    ++ + AK++   QD+  RG   L ++  +  A+   +KMA    IPV+T D
Sbjct: 57  YELIVL--DSQNNPAKELANVQDLTVRGTKVLLINPTDSDAVGNAIKMANQAKIPVITLD 114

Query: 120 TDVLPEDAGLRSTYIGTDNYEFGIALAQKVLESKKDGGTVCIQSGAPASENLKARVQGIR 179
                  +G   +++ +DN  FG  +A   +  K   G   IQ            ++GI 
Sbjct: 115 R---VASSGEVVSHVASDN-AFGGKVAGDFIAKKLGEGAKVIQ------------LEGIA 158

Query: 180 DTLAGVTKDKGAEKLTGQNGWTEPAGCPVYNNDDITLAAQQVRDVMTNNPELSAFVAVGG 239
            T A   +  G  K   +N +   A  P   + D T     +++++T +P++ A  A   
Sbjct: 159 GTSAARERGAGFMKSAEKNKFAMLASQPA--DFDRTKGLNVMQNLLTAHPDVQAVFA--- 213

Query: 240 WAQYAPQAYKQAMEPLKA--RLDSKDLVVVFGDNFGPQLPLLAEGLSHYNIGQRPYDMGY 297
                 Q  + A+  L+A       D++VV  D     +  +  G     + QRP  +G 
Sbjct: 214 ------QNDEMALGALRALQTAGKTDVLVVGFDGTQDGVKAVESGKLAATVAQRPDQIGV 267

Query: 298 ETIMALDKLTKGEKVEPFI 316
             I    K+ KGEK +  I
Sbjct: 268 IGIETAAKVLKGEKTQAII 286