Pairwise Alignments

Query, 337 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

Subject, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 25/238 (10%)

Query: 22  APQANAADREFALVFKVLNNAFSPPIQQGCEAAAKKLGDVTCTYLGPTEYDEAKQVQLAQ 81
           A    AA+R  A + K++   F      G + A K LG +  TY GPTE   + QVQL  
Sbjct: 28  AMTVQAAER-IAFIPKLVGVGFFTSGGNGAQEAGKALG-IDVTYDGPTEPSVSGQVQLVN 85

Query: 82  DMVTRGVAGLGVSAGNPKAMARIMKMAQDKGIPVVTFDTDVLPEDAGLRSTYI--GTDNY 139
           + V +G   + VSA +P  +   +K A  +G+ ++T+D+D  PE    RS YI  GT   
Sbjct: 86  NFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPE---CRSYYINQGTPKQ 142

Query: 140 EFGIALAQKVLESKKDGGTVCIQSGAPASENLKARVQGIRDTLAGVTKD-KGAEKLTGQN 198
              + +     +  K+   V     +P    +  + Q +++  A ++++  G E +T Q 
Sbjct: 143 LGSMLVEMAAHQVDKEKAKVAFFYSSP---TVTDQNQWVKEAKAKISQEHPGWEIVTTQF 199

Query: 199 GWTEPAGCPVYNNDDITLAAQQVRDVMTNNPELSAFVAVGGWAQYAPQAYKQAMEPLK 256
           G+           +D T + Q    ++   P+L A +A       A  A  QA E LK
Sbjct: 200 GY-----------NDATKSLQTAEGIIKAYPDLDAIIAPDA---NALPAAAQAAENLK 243