Pairwise Alignments

Query, 337 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

Subject, 296 a.a., Ribose import binding protein RbsB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 70.5 bits (171), Expect = 5e-17
 Identities = 80/312 (25%), Positives = 135/312 (43%), Gaps = 33/312 (10%)

Query: 4   VRTLTAALSVACLAAGLTAPQANAADREFALVFKVLNNAFSPPIQQGCEAAAKKLGDVTC 63
           ++ L   +S   L+A ++A  A A D   ALV   LNN F   ++ G +  A KLG    
Sbjct: 3   MKKLATLVSAVALSATVSA-NAMAKDT-IALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60

Query: 64  TYLGPTEYDEAKQVQLAQDMVTRGVAGLGVSAGNPKAMARIMKMAQDKGIPVVTFDTDVL 123
                ++ + AK++   QD+  RG   L ++  +  A+   +KMA    IPV+T D    
Sbjct: 61  VL--DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA- 117

Query: 124 PEDAGLRSTYIGTDNYEFGIALAQKVLESKKDGGTVCIQSGAPASENLKARVQGIRDTLA 183
               G   ++I +DN          VL  K  G  +  ++G  A       +QGI  T A
Sbjct: 118 --TKGEVVSHIASDN----------VLGGKIAGDYIAKKAGEGAK---VIELQGIAGTSA 162

Query: 184 GVTKDKGAEKLTGQNGWTEPAGCPVYNNDDITLAAQQVRDVMTNNPELSAFVAVGGWAQY 243
              + +G ++    + +   A  P   + D T     +++++T +P++ A  A       
Sbjct: 163 ARERGEGFQQAVAAHKFNVLASQPA--DFDRTKGLNVMQNLLTAHPDVQAVFA------- 213

Query: 244 APQAYKQAMEPLKA--RLDSKDLVVVFGDNFGPQLPLLAEGLSHYNIGQRPYDMGYETIM 301
             Q  + A+  L+A       D++VV  D        + +G     I Q P  +G + + 
Sbjct: 214 --QNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVE 271

Query: 302 ALDKLTKGEKVE 313
             DK+ KGEKV+
Sbjct: 272 TADKVLKGEKVQ 283