Pairwise Alignments

Query, 337 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

Subject, 340 a.a., Autoinducer 2-binding protein LsrB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 70.5 bits (171), Expect = 6e-17
 Identities = 75/251 (29%), Positives = 114/251 (45%), Gaps = 27/251 (10%)

Query: 9   AALSVACLAAGLTAPQANAADREFALVFKVLNNAFSPPIQQGCEAAAKKLGDVTCTYLGP 68
           A LSV  +AA   +    AA+R  A + K++   F      G + A K+LG V  TY GP
Sbjct: 10  ALLSVLGIAA--ISMNVQAAER-IAFIPKLVGVGFFTSGGNGAQQAGKELG-VDVTYDGP 65

Query: 69  TEYDEAKQVQLAQDMVTRGVAGLGVSAGNPKAMARIMKMAQDKGIPVVTFDTDVLPEDAG 128
           TE   + QVQL  + V +G   + VSA +P  +   +K A  +G+ V+T+D+D  PE   
Sbjct: 66  TEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPE--- 122

Query: 129 LRSTYI--GTDNYEFGIALAQKVLESKKDGGTVCIQSGAPASENLKARVQGIRDTLAGVT 186
            RS YI  GT     G+ +     +  KD   V     +P    +  + Q +++  A + 
Sbjct: 123 CRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSP---TVTEQNQWVKEAKAKIA 179

Query: 187 KD-KGAEKLTGQNGWTEPAGCPVYNNDDITLAAQQVRDVMTNNPELSAFVAVGGWAQYAP 245
           K+  G E +T Q G+           +D T + Q    ++    +L A +A       A 
Sbjct: 180 KEHPGWEIVTTQFGY-----------NDATKSLQTAEGILKAYSDLDAIIAPDA---NAL 225

Query: 246 QAYKQAMEPLK 256
            A  QA E LK
Sbjct: 226 PAAAQAAENLK 236