Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 413 a.a., CP4-57 prophage; integrase (NCBI) from Escherichia coli BW25113

 Score =  110 bits (274), Expect = 1e-28
 Identities = 113/400 (28%), Positives = 182/400 (45%), Gaps = 32/400 (8%)

Query: 6   LTDKQVRGIK-KPGNHP--DGGNLYLRVRENGSK--SFIVKATIDKKQREWTIGSYGSEE 60
           LTD +++  K K  ++   DG  L L ++ +GSK   F     + K++ + + G+Y +  
Sbjct: 8   LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPA-- 65

Query: 61  HHFSLAEARKRRDEIMAVIRAGGIS--EPTGKSVTQSVEPESTTFPAPLFGPFSIELIQQ 118
              SL++ARK R E   V+ A  I   E   + V  S E ++ TF       ++++    
Sbjct: 66  --VSLSDARKLRAE-SKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSV 122

Query: 119 IEGGFRNAKHRAQWRSTLETYCKSIWEKRVDRITTDDVLAILRPIWSTKA-ETASRVRGR 177
            E    +      WRS       +I +  +  I    ++  ++P+ +  A ET  R+  R
Sbjct: 123 TEDYADDI-----WRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQR 177

Query: 178 IERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKLTSID 237
           I  V+  A+  G      P+   G         +K Q+ + P++    LP L   + +  
Sbjct: 178 INEVMIYAQNTGLIDAV-PSVNIGKAF------EKPQKKNMPSIRPDQLPQLMHTMRTAS 230

Query: 238 TIASAALQFL--ILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSDSCIE 295
              S    F+  +LT  R  E   A+W+E D     W IPA+RMK  R+H VPLSD  + 
Sbjct: 231 ISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALA 290

Query: 296 ILKRMQKIRHS-DFVFPG-TREHAPLSDMTLSKVLH--GLCKGYTVHGFRSTFRDWCGEK 351
           IL+ M+ +    +F+FP   + + P++  T++  L   GL      HG RS       E+
Sbjct: 291 ILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE 350

Query: 352 TDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAW 391
             F  +  EA LAH   + V RAY R + LE RR +M  W
Sbjct: 351 -GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWW 389