Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 402 a.a., CPZ-55 prophage; predicted integrase (RefSeq) from Escherichia coli BW25113

 Score =  124 bits (310), Expect = 7e-33
 Identities = 115/370 (31%), Positives = 179/370 (48%), Gaps = 26/370 (7%)

Query: 26  LYLRVRENGSKSFIVKATIDKKQREWTIGSYGSEEHHFSLAEARKRRDEIMAVIRAGGIS 85
           L+L V  NGSK +  +  ++K++    IG Y       +L EAR+R  E  ++I A GI+
Sbjct: 31  LFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPL----ITLKEARRRATESRSLI-ANGIN 85

Query: 86  EPTGKSVTQSVEPESTTFPAPLFGPFSIELIQQIEGGFRNAKHRAQWRSTLETYCKSIWE 145
                   ++++  +    A  F   + +      GG+  + +  Q RS LE     +  
Sbjct: 86  PVEQARKEKAIDALNM---AAGFKKVAEDWFATRVGGWSES-YAKQVRSALEKDVYPVLG 141

Query: 146 KR-VDRITTDDVLAILRPIWSTKAETASRVRGRIERVLNAAKVRGFRSGENPAAWQGHLQ 204
           KR +  IT  DVLA+L+    T  E A ++R RI  +   A +    +  NP A    L 
Sbjct: 142 KRSIVDITARDVLALLQKKERTAPEQARKLRRRIGEIFKFAVITELVT-RNPVA---DLD 197

Query: 205 LLLPKRQKLQRGHHPALPFQDLPTLWQKLTSIDTIA-SAALQFLILTAARSGELRGAKWE 263
             L  R+    GH+  +P  ++P  ++ L    ++    A++ LILTA R+ ELR  +WE
Sbjct: 198 TALKARRP---GHNAWIPISEIPAFYKALERAGSVQIQTAIRLLILTALRTAELRLCRWE 254

Query: 264 EFDLEKRLWTIPASRMKAAREHLVPLSDSCIEILK-RMQKIRHSDFVFPGTREHAPLSDM 322
             +LE    T+PA  MKA R H+VPLS   +E+L+ +  +  +S FVFPG     PLS  
Sbjct: 255 WINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVFPGRFMDKPLSAS 314

Query: 323 TLSKVLHGLCKGY----TVHGFRSTFRDWCGEKTDFSREHAEACLAHTIGSAVERAYRRG 378
            + K L  +  GY    T HG+R+TF     E   +S +  E  LAH +   +   Y + 
Sbjct: 315 AILKALERI--GYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAH-VPKGIRGVYNQA 371

Query: 379 NSLEPRRRIM 388
             L+ RR +M
Sbjct: 372 AYLKQRRAMM 381