Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 393 a.a., integrase from Escherichia coli ECRC99

 Score =  122 bits (307), Expect = 1e-32
 Identities = 121/407 (29%), Positives = 187/407 (45%), Gaps = 40/407 (9%)

Query: 6   LTDKQVRGIK---KPGNHPDGGNLYLRVRENGSKSFIVKATIDKKQREWTIGSYGSEEHH 62
           LTD +V+  K   +P    DGG +YL +  NGSK + +K     K++  +IG Y      
Sbjct: 3   LTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPD---- 58

Query: 63  FSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPE-STTFPAPLFGPFSIELIQQIEG 121
            +LA+AR++R E   ++ AGG      K    +++     TF A            Q + 
Sbjct: 59  VTLADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEA------VAREWHQTKA 112

Query: 122 GFRNAKHRAQWRSTLETYCKSIW----EKRVDRITTDDVLAILRPIWSTKA-ETASRVRG 176
              + ++R +    ++T+ K I+    ++ +  I   ++L  LR +    A E   +VR 
Sbjct: 113 DRWSLRYRDE---IIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQ 169

Query: 177 RIERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKLTSI 236
           R   V   A V G R+  NPA       L  PK+      H P L   +LP     L   
Sbjct: 170 RCGEVFRYAIVTG-RADYNPAPDLAS-ALATPKKV-----HFPFLTANELPHFLTDLAGY 222

Query: 237 --DTIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSDSCI 294
               I   A Q ++LT  R+ ELR A WE+ D E +LW IPA  MK  R H+VP S+  I
Sbjct: 223 TGSIITKTATQIIMLTGVRTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVI 282

Query: 295 EILKRMQKI-RHSDFVFPGTRE-HAPLSDMTLSKVLHGLCKGY----TVHGFRSTFRDWC 348
            + K+++ I +H   VF G  +   P+S  ++++V+  L  GY    T HGFR T     
Sbjct: 283 ALFKQLEPISKHHPLVFIGRNDPRKPISKESINQVIELL--GYKGRLTGHGFRHTMSTIL 340

Query: 349 GEKTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFI 395
            E+  F+    E  LAH   +++   Y     L+ RR +M  +  +I
Sbjct: 341 HEQ-GFNSAWIEMQLAHVDKNSIRGTYNHAQYLDGRREMMQWYADYI 386