Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 421 a.a., Putative protein IntB from Escherichia coli ECOR38

 Score =  125 bits (314), Expect = 2e-33
 Identities = 122/421 (28%), Positives = 191/421 (45%), Gaps = 47/421 (11%)

Query: 6   LTDKQVRGIK---KPGNHPDGGNLYLRVRENGSKSFIVKATIDKKQREWTIGSYGSEEHH 62
           LTD +VR  K   K     DGG ++L V  NGSK + ++   + KQ+   +G Y      
Sbjct: 3   LTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPE---- 58

Query: 63  FSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPESTTFPAPLFGPFSIELIQQIEGG 122
            +LA+AR RRDE   ++ A G+ +P  K     VE       A  F   +IE     +  
Sbjct: 59  ITLADARVRRDEARNLL-ANGV-DPGDKKKNDKVEQSK----ARTFKEVAIEWHGTNKKW 112

Query: 123 FRNAKHRAQWRSTLETYCKSIWEKRVDRITTDDVLAILRPI-WSTKAETASRVRGRIERV 181
             +  HR   +S  +    ++ E+ +  + T D+LA ++ +  S + E A+R++ R   +
Sbjct: 113 SEDHAHRVL-KSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAI 171

Query: 182 LNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKLTSID--TI 239
           +  A   G     NPA      Q +        R H PAL  + +P L  K+ S     +
Sbjct: 172 MRYAVQSGLID-YNPA------QEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPL 224

Query: 240 ASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASR------------MKAAREHLV 287
              A++  +L   RS ELR A+W E D E  +WTIP  R             K    HLV
Sbjct: 225 TRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLV 284

Query: 288 PLSDSCIEILKRMQKIRHS-DFVFPGTRE-HAPLSDMTLSKVLHGLCKGYTV------HG 339
           PLS   + ILK++++   + D +F G  + H P+S+ T++  L  +  GY        HG
Sbjct: 285 PLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVM--GYDTKVEVCGHG 342

Query: 340 FRSTFRDWCGEKTDFSREHAEACLAHTIGSAVERAY-RRGNSLEPRRRIMTAWEAFILTG 398
           FR+       E   +SR+  E  ++H   ++V  AY  +   LE RR ++  W  F+   
Sbjct: 343 FRTMACSSLVESGLWSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDVN 402

Query: 399 R 399
           R
Sbjct: 403 R 403