Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 416 a.a., tyrosine-type recombinase/integrase from Dickeya dadantii 3937

 Score =  134 bits (338), Expect = 4e-36
 Identities = 122/420 (29%), Positives = 190/420 (45%), Gaps = 30/420 (7%)

Query: 2   PINKLTDKQVRGIKKPGNHPDGGNLYLRVRENGSK--SFIVKATIDKKQREWTIGSYGSE 59
           P+     K  +  +K     DG  LYL V+ +GSK   F       KK+   + G++ + 
Sbjct: 7   PLTNTEIKAAKPAEKEYTLQDGDGLYLLVKPSGSKIWRFNYYRPDTKKRALISFGAFPA- 65

Query: 60  EHHFSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPES---TTFPAPLFGPFSIELI 116
               SLAEAR+RR+   A+I  G   +P      Q  + ++    TF       + ++  
Sbjct: 66  ---VSLAEARQRRESAKALISKG--IDPQFHQQQQREQEQAISLNTFAKVAADWYEVKKS 120

Query: 117 QQIEGGFRNAKHRAQWRSTLETYCKSIWEKRVDRITTDDVLAILRPIWST-KAETASRVR 175
           QQ+         +  WRS  +     I  + + ++T    +  L PI ++ K ET  RV 
Sbjct: 121 QQLAAN----TIKDIWRSLEKYVFPFIANQPISQLTARHFITALEPIQASGKLETVKRVS 176

Query: 176 GRIERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKLT- 234
            RI  V++ A   G     NPAA       +    Q   + H P +  + LP L + L+ 
Sbjct: 177 QRINEVMDYAVNSGLIPA-NPAA------KIRKAFQTPVKTHMPTIRPEALPGLMKTLSV 229

Query: 235 -SIDTIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSDSC 293
            SI+      +++ +LT +R  E    +W E DL +  WTIPA RMK  REH++PL    
Sbjct: 230 ASIELQTRLLIEWQLLTVSRPAEAAETRWSEIDLMQNTWTIPAGRMKMRREHVIPLPPQA 289

Query: 294 IEILKRMQKIR-HSDFVFPGTRE-HAPLSDMTLSKVLHGL-CKGYTV-HGFRSTFRDWCG 349
           + IL  M+ I  H +++FP  ++   P++  T +  L  +  KG  V HG R+ F     
Sbjct: 290 LAILDAMKPISGHREYLFPSAKDPKQPMNSQTANAALRRMGYKGVLVSHGLRAIFSTAAN 349

Query: 350 EKTDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFILTGRSPEDQVDKAA 409
           E   F  +  EA LAH   + V RAY R   LE R+ +M  W  F+ T  + +    + A
Sbjct: 350 E-AGFPPDVIEAALAHVDTNEVRRAYNRSTYLEQRKVLMCWWGEFVETAATGKAMASEGA 408