Pairwise Alignments

Query, 409 a.a., integrase DNA protein from Sinorhizobium meliloti 1021

Subject, 396 a.a., phage-related integrase from Agrobacterium fabrum C58

 Score =  363 bits (931), Expect = e-105
 Identities = 190/397 (47%), Positives = 254/397 (63%), Gaps = 17/397 (4%)

Query: 3   INKLTDKQVRGIKKPGNHPDGGNLYLRVRENGSKSFIVKATIDKKQREWTIGSYGSEEHH 62
           +NKL+ + V  I KPG H DGG LYL V ++G+K ++       + RE  +G      H 
Sbjct: 5   MNKLSARAVETISKPGRHGDGGGLYLVVDKSGAKRWVFLYRRSDRLREMGLGGV----HS 60

Query: 63  FSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPESTTFP-APLFGPFSIELIQQIEG 121
            +LA+AR+   +    ++AG             ++ + T  P  P FG  + + I  ++ 
Sbjct: 61  VTLAKARELAQDARTKLQAG----------VDPIQAKHTAPPLVPTFGDEADDFIAAMKP 110

Query: 122 GFRNAKHRAQWRSTLETYCKSIWEKRVDRITTDDVLAILRPIWSTKAETASRVRGRIERV 181
            FRNAKH AQW  TL  Y   + +K +  +TT DVL +L+PIW TK+ETASRVRGRIERV
Sbjct: 111 QFRNAKHVAQWEMTLREYAAPLRQKLITEVTTADVLGVLKPIWLTKSETASRVRGRIERV 170

Query: 182 LNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKLTSIDTIAS 241
           L+AAK +G R+GENPA W+GHL  LLPKR+KL RGHH A+P+ D+     +L   + +A+
Sbjct: 171 LDAAKAKGLRTGENPALWRGHLDKLLPKRRKLARGHHKAMPYADVAAFIIELRKREAVAA 230

Query: 242 AALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSDSCIEILKRMQ 301
            AL+F ILTAARSGE  GAKW E D + ++WT+PA RMKAAREH VPLS   I ILK++ 
Sbjct: 231 TALEFTILTAARSGETLGAKWHEIDWKDKIWTVPAERMKAAREHRVPLSSRTITILKKLA 290

Query: 302 KI--RHSDFVFPGTREHAPLSDMTLSKVLHGLCKGYTVHGFRSTFRDWCGEKTDFSREHA 359
           +     + FVFPG +   PLS M +  VL  +    TVHGFRS+FRDWCGE ++F R+ A
Sbjct: 291 EFGSDENSFVFPGQKPGKPLSVMAMDMVLRRMEVDVTVHGFRSSFRDWCGEVSNFPRDVA 350

Query: 360 EACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFIL 396
           EA LAH +G   ERAYRRG++LE RR++M AWE F +
Sbjct: 351 EAALAHVVGDKTERAYRRGDALEKRRKLMAAWEKFCI 387